Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00399 ATGATTTGCTCACTAATTACCCCTGATTTCCCATTTCCCTCTCTCAAACCCATATTTGCCAGACCCCCACCAACGCCATCTCCCTCTTTTTCCAAACCCATCCTCTGTTTGCACCATCGAAACCCCAATATCTTCGAAAACCCATCAAAACCCATCGGCATTCTCATCAAAACGCTTCTAGAGAGCAACCCAGATCGTGTGTTGTACAGAGAAGTGAAGAAAAAGAAAGGGAACGGCGGAAGAAGAGGGTTTCATCTTGTGGGTAGTCATCAAATGTTGCTCCTCTGTGGCCTTGGGTATTGGGTTCAGGGCTTTAGGTGCTTTCCATGGCTGGCTCTGAACTATCATATGGCTCATTACCTTAATCTTCATCCTTCCATATTGCAACTTGTGCAGAATTCTGGAAACCTTCCTATGGTTGCTAAACCCTTGTACGGAATTCTCTCTGATGCTTTGTATATTGGTGGGGCTCGTAGAGTTCCTTATGTTTCACTTGGAGTGCTCTTGCAGGTCCTATCTTGGGGATCTTTGGCATTGATCCCTGTGGCAGGTGAAGCTCTTCCTGCTTTAATGGCATGTGTTCTTCTAAGTAATCTTGGAGCATCAATAACAGAAGTTGCAAAAGACGCACTTGTTGCAGAATATGGCCAAACAAACAAAATTTGTGGCCTTCAATCCTATACATTCATGGCTTTAGCTGTTGGTGGAGTGTTAGGCAATTTTATTGGTGGATATAACTTACTGAGTTCACCACCAAGAAAAATGTTTCTTCTGTTTTCCATTTTACTTTCTCTCCAACTTTCAGTTTCATTTGCAACAAGAGAGGAATCTCTTGGTTTGCTGCAACTTCCAGAACCTGATGTTCATGGGAAATCAATCATGGAAAATGTTAGAAATCAGATATCTGACCTTGTAACTGCTATTAGCGATCCAGGCGTATCTCGCCCGCTGGCTTGGATTGTAGCTTCCATTGCCATGGTCCCTCTTCTATCAGGGTCTATCTTTTGCTATCAAACACTATGCCTTAATCTTGATCCTTCCATAATTGGAATGTCTAGAGTTATTAGCCAATTGGTTCTTCTTTCTGTTACCGTACTTTACGACCGCCATTGGAAAAGAGTATCCATGAAGAAGCTAATTGGCATGGTGCAGATATTGTATGCTTTTTCCTTTCTCCTTGATATTGTTTTGGTGAAACAGATAAATCTGAAGCTGGGCATTTCCAATGAGTTGTTTGCTCTTTGCTTTTCGGGTTTGGCTGAAACCATTGCACAGTTTAAGCTTTTACCATTTTCAGTACTCTTTGCAAGCTTAAGTCCGAAAGGTTGTGAAGGATCTCTGATTTCGTTTTTCGCATCGGCCGTGTGCTTGTCTTCCATAGTTAGTGGTTTTTTTGGCATCGGGTTGGCTTCTTTGATTGGAATAAGATCAGGAAACTACTCAAGCTTGCCAATGGGGATTTTGATACAGTTCATTGCAGCTTTATTGCCATTAATCTGGATCCATTTTGTTCCCACGACGTCGCCTGTTGTCGAAAGAGAAAAGAAGAGAGTAATGAGTAGAAGATCTCGGAAAAATAGAAGGGTCGGACGAGTCATGTATAGTGGTTCTGTAAATGTTTATCGACGCGAGAGAGAATCCGAGATGCAGGGGTGA 1656 42.39 MICSLITPDFPFPSLKPIFARPPPTPSPSFSKPILCLHHRNPNIFENPSKPIGILIKTLLESNPDRVLYREVKKKKGNGGRRGFHLVGSHQMLLLCGLGYWVQGFRCFPWLALNYHMAHYLNLHPSILQLVQNSGNLPMVAKPLYGILSDALYIGGARRVPYVSLGVLLQVLSWGSLALIPVAGEALPALMACVLLSNLGASITEVAKDALVAEYGQTNKICGLQSYTFMALAVGGVLGNFIGGYNLLSSPPRKMFLLFSILLSLQLSVSFATREESLGLLQLPEPDVHGKSIMENVRNQISDLVTAISDPGVSRPLAWIVASIAMVPLLSGSIFCYQTLCLNLDPSIIGMSRVISQLVLLSVTVLYDRHWKRVSMKKLIGMVQILYAFSFLLDIVLVKQINLKLGISNELFALCFSGLAETIAQFKLLPFSVLFASLSPKGCEGSLISFFASAVCLSSIVSGFFGIGLASLIGIRSGNYSSLPMGILIQFIAALLPLIWIHFVPTTSPVVEREKKRVMSRRSRKNRRVGRVMYSGSVNVYRRERESEMQG 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3620944 3623712 + ClCG05G003880.1 Cla05g00399 271889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00399 551 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 43 549 IPR039309 -
Cla05g00399 551 TIGRFAM fbt: folate/biopterin transporter 168 527 IPR004324 GO:0016021
Cla05g00399 551 SUPERFAMILY MFS general substrate transporter 93 503 IPR036259 -
Cla05g00399 551 Pfam BT1 family 103 516 IPR039309 -
Cla05g00399 551 Gene3D MFS general substrate transporter like domains 90 496 IPR036259 -
Cla05g00399 551 PANTHER FOLATE-BIOPTERIN TRANSPORTER 9, CHLOROPLASTIC-RELATED 43 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00399 - - - cmo:103483535 954.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00759 Cla-Chr2:9500954 Cla05g00399 Cla-Chr5:3620944 1.38E-105 dispersed
Cla05g00399 Cla-Chr5:3620944 Cla08g01373 Cla-Chr8:26610355 5.32E-23 dispersed
Cla05g00399 Cla-Chr5:3620944 Cla05g00533 Cla-Chr5:4905569 6.76E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g806 . . . . . . . . . . . Cma14g01853 . Car14g01660 . . Cpe03g01552 . . . . . . . . . . . . . . . . Cone7ag0358 Cone4ag0370 Lsi05g01781 . . Cme06g00440 . Blo07g00290 Bda11g00652 . . Bpe13g00535 . . . . Cmo14g01898 . . . . . . . . . . . . . Cla05g00399 Cam05g0435 Cec05g0441 Cco05g0440 Clacu05g0430 Cmu05g0411 Cre05g0472 . Csa03g01156 Chy06g00419 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010245 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00399 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0