Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00401 ATGGATTCTCCTATCCCCTTCCAAGACCTTAATCTTCTCCCCGACCCATCCACTGCTGTAATGGCGGCCGCAACTTCCCCCAAAACAGCCACCGCAATCAACTCTTCTCTCAACAAAATCGTTGAGACCGGCAAGTTGCTGACCCCCAAACTTGAACCCAAGCTCGAGCCCTTCGACGATCTTTTCGAGACTCGGGAGGCTCAACAACCCCAACCAGTTCAGCAACCCTTCTTGTCGAGCCCTTCCTCTAACTTCTTCTCTAACTCTGACTTCGCTCATACACCCTTTTCAGACCAAAATCATACCCCGCTTTCTCAGTCTTCATCCATTTCCTCTGACAAAGACAATGTTTACTCCGAATTTTACCGCATTTCTCAGCTGTTTAGGTCTGCGTTTGGTAAAGGACTTCAGAGCTATGGAGATGTTGAAGTTGTGGATCCTGATGCTCAAGCAATTGTCCCAGTTCCGGAGGAGAATCAGATTTCAACTATGGTCGTCTCGAAGAGGAGGTATGATAAAAGGTCCTCTGAACTCGTGAGAGTCACTGATCTTGGGGTTGAGGACCAGAGGTACTTTCGAGATGTAGTGAGACGGACCAGGATGATTTTCGATTCGCTGCGTGTGTTATCAACGGCGGAGGAGGAGAAGAGTCCTGGACTAATCCGGCGACTTCGGGGTGATTTGAGGGCTTCGTCCTTGATGAGAGAACGCGGTCTGTGGCTGAATCGTGACAAACGGATTGTTGGTTCGATACCAGGAGTGCACATTGGCGATCTATTCTTCTTTAGGATGGAATTGTGTGTTGTGGGATTGCATGGTCAGGCTCAAGCTGGAATTGACTATGTTCCTGCGAGTCAGAGCTCCAATGGCGAGCCAATTGCCACTAGTATAATTGTTTCTGGTGGATATGAGGACGATGAGGATGCGGGGGACATGATAATCTACACGGGTCATGGTGGGCAAGACAAATTCTCAAAACAATGTATGCACCAGAAACTTGAAGGTGGAAATCTTGCACTAGAGAGAAGTATGCACTACGGGATTGAAGTGAGGGTTATTCGAGGTATGAAGTACGCAGGCAGTGTAGCAAGTAAGATTTATGTATACGATGGTCTGTACAGAATTCTTGACTGTTGGTTTGATGTGGGGAAATCGGGTTTTGGTGTGTACAAGTATAAGCTCTTAAGAATTGATGGTCAAGCCGAAATGGGTAGCTCCATTTTGAAGTTTGCGGAGAATCTAAGGACTAGACCATTGTCTTTGAGGCCTTCTGGTTATCTCAGTCTCGACATTTCACTGAAGAAGGAGGCAGTTCCAGTTCTCCTGTTCAATGATATTGACAATGATCAAGAACCATTGTATTATGAGTATCTTGTTAGGACTGTGTTTCCACCTTTCGCCTTTCACCAATCAGGAAGTGGTACTGGGTGTAATTGCGTTTCAGGTTGCGTTAATGATTGCTTTTGTTCTATGAAAAATGGTGGGGAGTTTGGTTATGACCAAAATGGATTTCTAGTTAGAGGAAAGCCTATAATTTTTGAATGCGGACCATTCTGTCAGTGTCCCCCTCAATGTCGGAATCGTGTTTCTCAGAAGGGCTTGAGGCACAGACTTGAAGTGTTTAGGTCCAGGGAAACAGGTTGGGGAGTTAGATCTTTGGACTTGATACACGCTGGTGCTTTTATATGTGAATATGCAGGAGTTGTCCTCACGAGGGAACAAGCTCAAGTTCTTTCTATGAATGGTGATACATTAATATATCCCAATCGTTTTTCAGATAGATGGGCTGAATGGGGTGATCTATCTCAAATATATTCTAATTATGTGCGGCCATCTTACCCCTCTGTTCCTCCTCTCGATTTTGCGATGGATGTATCCAGAATGAGGAATGTTGCTTGTTATATAAGCCATAGTACATCTCCAAACGTGTTGGTGCAGTTCGTGTTATATGATCATAATAATTTAATGTTTCCTCACCTTATGTTGTTTGCAATGGAAAATATCCCTCCTCTGAGGGAGCTTAGCATTGACTATGGTGTGGCTGATGAATGGTCAGGGAAACTTGCTATTTGTAACTAA 2079 44.78 MDSPIPFQDLNLLPDPSTAVMAAATSPKTATAINSSLNKIVETGKLLTPKLEPKLEPFDDLFETREAQQPQPVQQPFLSSPSSNFFSNSDFAHTPFSDQNHTPLSQSSSISSDKDNVYSEFYRISQLFRSAFGKGLQSYGDVEVVDPDAQAIVPVPEENQISTMVVSKRRYDKRSSELVRVTDLGVEDQRYFRDVVRRTRMIFDSLRVLSTAEEEKSPGLIRRLRGDLRASSLMRERGLWLNRDKRIVGSIPGVHIGDLFFFRMELCVVGLHGQAQAGIDYVPASQSSNGEPIATSIIVSGGYEDDEDAGDMIIYTGHGGQDKFSKQCMHQKLEGGNLALERSMHYGIEVRVIRGMKYAGSVASKIYVYDGLYRILDCWFDVGKSGFGVYKYKLLRIDGQAEMGSSILKFAENLRTRPLSLRPSGYLSLDISLKKEAVPVLLFNDIDNDQEPLYYEYLVRTVFPPFAFHQSGSGTGCNCVSGCVNDCFCSMKNGGEFGYDQNGFLVRGKPIIFECGPFCQCPPQCRNRVSQKGLRHRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTREQAQVLSMNGDTLIYPNRFSDRWAEWGDLSQIYSNYVRPSYPSVPPLDFAMDVSRMRNVACYISHSTSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPLRELSIDYGVADEWSGKLAICN 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3643977 3646055 + ClCG05G003910.1 Cla05g00401 271891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00401 692 Pfam Pre-SET motif 432 528 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cla05g00401 692 ProSiteProfiles YDG domain profile. 249 396 IPR003105 -
Cla05g00401 692 SMART G9a_1 244 400 IPR003105 -
Cla05g00401 692 Gene3D SET domain 405 692 IPR046341 -
Cla05g00401 692 SMART set_7 536 685 IPR001214 GO:0005515
Cla05g00401 692 SUPERFAMILY PUA domain-like 230 409 IPR015947 -
Cla05g00401 692 ProSiteProfiles SET domain profile. 536 679 IPR001214 GO:0005515
Cla05g00401 692 MobiDBLite consensus disorder prediction 89 112 - -
Cla05g00401 692 ProSiteProfiles Pre-SET domain profile. 475 533 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cla05g00401 692 SUPERFAMILY SET domain 419 691 IPR046341 -
Cla05g00401 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 68 690 - -
Cla05g00401 692 Pfam SET domain 547 679 IPR001214 GO:0005515
Cla05g00401 692 SMART preset_2 428 520 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cla05g00401 692 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 107 692 IPR025794 GO:0016571
Cla05g00401 692 Gene3D - 246 404 IPR036987 -
Cla05g00401 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH9-LIKE 68 690 - -
Cla05g00401 692 Pfam SAD/SRA domain 248 400 IPR003105 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00401 K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] - csv:101222210 1345.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00500 Cla-Chr4:18426188 Cla05g00401 Cla-Chr5:3643977 2.61E-120 dispersed
Cla05g00401 Cla-Chr5:3643977 Cla10g00215 Cla-Chr10:2523216 1.05E-109 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61004 PF02182 SAD_SRA 8.80E-49 CL0178 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00401 Cla_Chr05 FPKM 5.382703 5.126612 5.971563 5.238113 12.344374 12.752027 13.503296 19.841017 19.342999 23.061972