Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00403 ATGGAACCACCTCTAGGTTTACTGGGTAGCAGCGGCATTGCCAGCGCCGGCGGCTCTTCCGGAGCCTCCAACGATGAGAATTCTGTTTCCAAGGCTAAGGAGTTAAACAACAACCAGACGGATTTGTCATCCGAGGAATTTTCTTCCCCTGTTGAGGCTGAGCTCGAATTAGGGCTAGGGCTCAGTCTTGGAAATGGGGTTTCTTCTGGAAAGGGTAAACATGGTGGCTGGGGTGAGCGCGGCCGGATATTGACGGCGAAAGATTTTCCCTCGGCGATCTCTCCTGGTGGGTCGTCTTCTTCTTCTTCTTCGGCTAGATTCTCTGGCAGACCTGCTGCTGTTTCTGGTGTCAAGAGGGCGGCGGAACCTGTTAACCGCGACGGCGGTTCTCCTCCTCCGGCTGTCAGTCAGGTGGTGGGATGGCCGCCCTTGAGAGCTTACAGAATTAACAGCCTGGTTAACCAAGCTAAAAATCAAAGGGCTGGAGATGAAAAGGAGCTGCTTTCTCTCAAGAATAGTTCCAATGGTGTTTCAGAGAAGATCCATGATGGCAAAAATACGAGTGCCAGTGATACTGAAAAGGGGCCTCTAGGTTTTGTGAAAGTGTATATGGACGGAGTTCTAATTGGCAGGAAAGTGGATTTGAATGCCCATTCTAGCTATGAGACTTTGGCTCTGATGCTCGAGGATATGTTTTTTAAGTCCGCGGGAAGCGTCCCATCCACCGGCTTAAGTGGAGGTCAGGATGAACAAGCACCAAAACTCTCGAAACTTCTGACTGGCTCCTCTGAGTTTGTGCTCACCTATGAAGATAAAGAGGGAGACTGGTTGTTGGTTGGGGATGTTCCTTGGAGGATGTTCCTTGTCTCGGTTAAGAAACTTCGAATTATGAGGACATCTGAGGCAAAGGGACTCGTTCCGGCAACGAGGAGTTACAACTTCCTCATTAACCAAAGCGCTATAAAACTTCCAAATAACAACAAGATTGAAGCTCACAAAGCATTATTTTCGATTTCATCCACCGCCATGTACTGGGTGGCAACACGAAACGTCGTTTTTTCCCCCCGGTGGCGTTTTTTGGCTCTTTTGATTGGCTTCCCTCCGCGCAACTTCACCTCATTTACTCACTCACCGGCGTTTTTTGAAAGGCAACGGCTTGAAAAGTTGCACTTTGGGAAAGGTAGAAAATATTCAAGAGGAAGCATCAAAGCTGCTAAGAAGTTTAAGGATATTAATAATGTCCAAGACGATAAGTTCCTTTCTCACATTTTATGGTGGAAAGAGATGGTGGAATCATGCAAGAAGCCGTCATCTGTCCAGCTGGTTAAGAGGCTTGACTTTTCCAATTTGCTAGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACCCTTAACTGGGAGATTTTACAGTTCAAAGCAAAGTTTCCTCGAGAAGTTTTGCTCTGTAGAGTCGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTAGAATACGCTGGTTTAAATCCTTTTGGAGGTCAGCGCATGGATAGTATTCCAAAAGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACATGTAATGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAGGGCCCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCAGGCAGTCCTTATGTCTTTGGGCTCGTTGGGGTCGATCACGATCTTGACTTTCCAGAACCAATGCCTGTGGTTGGAATATCTCGATCTGCAAGGGGCTATTGCATAAGCCTTGTCATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAAGAAGCGCTGGTTACTAAACTGCGCACTTGTCAATACCATCATTTATTTCTTCACACTTCATTAAGGAACAACTCCTCAGGCACTTGTCGCTGGGGTGAATTTGGTGAGGGTGGACGGCTATGGGGGGAATGTAATTCCAGACATTATGAGTGGTTTGATGGAAATCCTCTTGATAATTTTTTGTATAAGGTTAAAGAGCTTTATGGTCTTGATGATAAAGTTACATTTAGGAATGTAACAATATCGTCAGAGAATAGGCCACATCCATTAACACTAGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGTATATTAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGACTGCGACCACTATTCAAGCAACATGCAGGCTTATGAGCAATGTCACATGTGCGATTCCAGACTTCACTTGCTTTCCGCCAGCCAAGCTTGTGAAATTATTGGAAATGAGGGAGGCCAATCATATTGAATTCTGTAGGATGAAGAATGTACTTGACGAAATATTACACATGCATAAAAATTGTGAGTTAAACAATATCCTGAAATTGTTGATGGATCCTGCATCCGTGGCAACTGGGTTGAAAATTGACTGTGATACATTCGTCAACGAATGTGAATGGGCTTCCAGTAGAGTTGACGAAATGATTTTTCTTGGTAGTGAAAGTGAAAGTGATCAGAAAATCAGTTCTTATCCTATCATTCCTAATGATTTTTTCGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGAGGATTCACATTGAAGTATCGTGTACAGAAGTTGAAAGGGCAGCTGAAGCACTTTCCCTTGCAGTTACTGAAGATTTCGTCCCAATAATTTCAAGAATCAAGGCTACTACAGCACCACTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGAGAGCATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGATGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGAAAAAAGGTTGGGGAGGAGTGGTTTACCACGAAGAAGGTGGAGGATGCTTTAGCAAGGTACCAAGAGACCAATGCCAAAGCTAAAGCAAAAGTAGTGGATCTGCTGAGGCAACTTTCTTCTGAATTGCTAGCTAAAATTAACGTCCTAGTCTTTGCTTCCATGTTACTCATAATCGCCAGGGCGTTATTTGCTCATGTGAGTGAAGGGAGGAGGAGGAAATGGGTTTTTCCCACCCTTGTTGCACCCAGTCATAGGTCGAAGGGCATACAATCATTGGAGGGGAAAGTTGGGATGAAGCTGATTGGACTATCTCCCTATTGGTTTGATGCCGTGGAAGGCAATGCTGTGCAGAATAGTATTGAGATGGAATCGTTATTTCTTTTGACTGGTCCAAATGGGGGTGGAAAATCTAGTTTGCTTCGATCCATTTGTGCTGCTGCTTTGCTTGGGATATGTGGATTTATGGTACCAGCAGAGTCCGCCCTGATTCCCCACTTTGACTCAATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGAAAAAGTTCGTTTCAGGTGGAAATGTCGGAGATGAGATCCATCATCAGTCGAGTAACAGAAAGAAGTCTTGTACTTATAGATGAAATCTGTCGCGGAACAGAGACAGCAAAAGGAACTTGTATTGCTGGGAGCATTATTGAAGCTCTTGATAAAGTAGGTTGTCTTGGTATCGTCTCCACTCACTTGCATGGAATATTCAATTTGCCTTTAGATACCAAAAACACTGTGTACAAAGCAATGGGAACCATTTGTGCTGATGGACGAACGGTTCCCACTTGGAAGTTGATTAGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCGAAGAATGAAGGAATCTCTGAAGCTATAATTCAAAGGGCTGAAGATTTGTATCTCTCAAATTATGCTAAAGAAGGAATTTCAGGAAAAGAGAAGACAGATTTGAACTTTTCTGTTTCTTCTCATGCAAGCCTTAATGGCAATGGCAAATCCCATCACAAGTCAAATGGTGTTATAGTAGAAGCTGATAAGCCAAAAACAGAGACAGCTAGCAAAACAGGTGTCTTGTGGAAGAAAATTGAGGGGGCTATCACTGCAATATGCCAAAAGAAGTTGATAGAGTTCCACAAAGATAACAACACATTGGAACCTGCAGAAATTCAATGTGTTGTAATTGATGCCAAAAAGAAGCCACCTCCATCAACAATAGGTGCTTCGAGCGTGTACGTGATTCTTAGACCGGATGGTAAATTCTACGTCGGACAGACTGATGATCTGGAGGGTCGAGTCCGTTCACATCGTTTGAAGGAAGGAATGCGGGATGCTGCATTTCTTTATTTTTTGGTCCCTGGTAAGAGCTTAGCTTGCCAACTCGAAACTCTTCTCATCAATCGACTTCCTGATCACGGGTTCCAGCTAACTAATGTTGCTGATGGAAAGCACCGGAATTTCGGCACGTACAATCTCTTACCAGATAATGTGACTGTTTGTTCATAA 4476 43.86 MEPPLGLLGSSGIASAGGSSGASNDENSVSKAKELNNNQTDLSSEEFSSPVEAELELGLGLSLGNGVSSGKGKHGGWGERGRILTAKDFPSAISPGGSSSSSSSARFSGRPAAVSGVKRAAEPVNRDGGSPPPAVSQVVGWPPLRAYRINSLVNQAKNQRAGDEKELLSLKNSSNGVSEKIHDGKNTSASDTEKGPLGFVKVYMDGVLIGRKVDLNAHSSYETLALMLEDMFFKSAGSVPSTGLSGGQDEQAPKLSKLLTGSSEFVLTYEDKEGDWLLVGDVPWRMFLVSVKKLRIMRTSEAKGLVPATRSYNFLINQSAIKLPNNNKIEAHKALFSISSTAMYWVATRNVVFSPRWRFLALLIGFPPRNFTSFTHSPAFFERQRLEKLHFGKGRKYSRGSIKAAKKFKDINNVQDDKFLSHILWWKEMVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTCNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCISLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWGECNSRHYEWFDGNPLDNFLYKVKELYGLDDKVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYIRDLLLNPPAYETATTIQATCRLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELNNILKLLMDPASVATGLKIDCDTFVNECEWASSRVDEMIFLGSESESDQKISSYPIIPNDFFEDMESSWKGRVKRIHIEVSCTEVERAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYAREHQSVWFKGRRFAPAVWAGSPGEDEIKQLKPALDSKGKKVGEEWFTTKKVEDALARYQETNAKAKAKVVDLLRQLSSELLAKINVLVFASMLLIIARALFAHVSEGRRRKWVFPTLVAPSHRSKGIQSLEGKVGMKLIGLSPYWFDAVEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIISRVTERSLVLIDEICRGTETAKGTCIAGSIIEALDKVGCLGIVSTHLHGIFNLPLDTKNTVYKAMGTICADGRTVPTWKLISGICRESLAFETAKNEGISEAIIQRAEDLYLSNYAKEGISGKEKTDLNFSVSSHASLNGNGKSHHKSNGVIVEADKPKTETASKTGVLWKKIEGAITAICQKKLIEFHKDNNTLEPAEIQCVVIDAKKKPPPSTIGASSVYVILRPDGKFYVGQTDDLEGRVRSHRLKEGMRDAAFLYFLVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTYNLLPDNVTVCS 1491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3654851 3677039 - ClCG05G003940.2 Cla05g00403 271893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00403 1491 MobiDBLite consensus disorder prediction 88 136 - -
Cla05g00403 1491 SUPERFAMILY DNA repair protein MutS, domain I 460 570 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cla05g00403 1491 MobiDBLite consensus disorder prediction 13 47 - -
Cla05g00403 1491 Coils Coil 993 1020 - -
Cla05g00403 1491 Pfam MutS domain V 1110 1290 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cla05g00403 1491 SUPERFAMILY CAD & PB1 domains 195 297 - -
Cla05g00403 1491 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 509 1441 - -
Cla05g00403 1491 MobiDBLite consensus disorder prediction 1 50 - -
Cla05g00403 1491 ProSitePatterns DNA mismatch repair proteins mutS family signature. 1187 1203 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cla05g00403 1491 CDD ABC_MutS_homologs 1096 1279 - -
Cla05g00403 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1097 1290 IPR027417 -
Cla05g00403 1491 MobiDBLite consensus disorder prediction 92 109 - -
Cla05g00403 1491 Pfam MutS domain I 472 561 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cla05g00403 1491 Gene3D DNA repair protein MutS, domain I 461 566 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cla05g00403 1491 ProSiteProfiles PB1 domain profile. 197 301 IPR000270 GO:0005515
Cla05g00403 1491 SMART mutATP5 1106 1292 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cla05g00403 1491 Pfam AUX/IAA family 56 307 IPR033389 -
Cla05g00403 1491 SUPERFAMILY GIY-YIG endonuclease 1399 1462 IPR035901 -
Cla05g00403 1491 Gene3D - 193 311 - -
Cla05g00403 1491 Coils Coil 153 173 - -
Cla05g00403 1491 Gene3D - 1085 1364 IPR027417 -
Cla05g00403 1491 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 509 1441 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00403 - - - csv:101209091 2125.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00403 Cla06g00701 CCT
Cla05g00403 Cla06g00701 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00403 Cla-Chr5:3654851 Cla08g01185 Cla-Chr8:24753622 5.51E-33 dispersed
Cla11g00228 Cla-Chr11:2617430 Cla05g00403 Cla-Chr5:3654851 2.14E-26 dispersed
Cla11g01185 Cla-Chr11:24817124 Cla05g00403 Cla-Chr5:3654851 1.30E-06 dispersed
Cla05g02274 Cla-Chr5:34391549 Cla05g00403 Cla-Chr5:3654851 2.76E-21 transposed
Cla05g00403 Cla-Chr5:3654851 Cla06g00701 Cla-Chr6:8917928 3.38E-76 wgd
Cla05g00403 Cla-Chr5:3654851 Cla07g00128 Cla-Chr7:1466058 3.95E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61005 PF02309 AUX_IAA 1.40E-56 CL0072 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00403 Cla_Chr05 FPKM 4.002005 3.824249 5.757477 6.753224 7.353319 7.573544 7.011885 12.916573 14.497428 13.488901