Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00405 ATGGGGTTTCCGATAATGGGCACGCCCTTTCACATTCCGGTCACTGCTGCTCAGGTGGGAACATACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCTATTCCGATGCCAGTACTATGATTCGTATTGATGGCAATTTCAGAGAGACCGCCACTGCAATGCTGTTTGTTGAATTGTGTTTGACAATACATCGTTTAGTAGATTTCATGGCACTTTTATTCTTGTTCTGCTATCTTCTTATGATTCACATACAAATACATGCCCTTGTTATGTCACTTAGTTATACCGGGATTGAGATCAAGACCGCACATTCACTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGCTCTGTTCAAATGAAGAATCTCAATCGAATGAGAAAGTTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTCCACCATTATCCAGCAGTCTTATTAAGTCAGAGCAATCTGGATTCCACCTTAAATGCTTCTACCACAGTTCCAGAGACAGTTTGGTCTTCTGGATTGTCTTTTGATTTTTTGTTCGGGCTTGGAGTCACCCTTGGAGTTGATTTGATCGTGCTTTTCATTTGTAAATCTAACGTCTTATATCTTTATTATCTTGTAAGTTTCATGTTGATCACTCTTCCCTGCAATACTTTGCTTAATGAAGTTATAACTTTTGTAGTGCCCAATTACTCACTTAATGGAGCAGTACAGACACGAGAATTTGCAGCCCCTGTTGTCAAAGAAAATGGTCACATCGATAACCATAAGTTTGTAGAGCAGCAAGTGCAGCAAGTTTCAGAGCCGAAAAGCATTATTGAGGAAAATACAGCAGAAGTAAATTCTATGCATCAGAACACATCAACTGGTTCACAAGATCATTTTCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCATACATATGCTTCAATTCTAAGAGTTGCTAAAGGACAAGATGTTCCTGCCGCCATTGTTGCTCCTCAATATCCTGTTAGTAAGGAGACACCACCTGCTTCAGAGCAAAACTACACTCCACCTCCCACCAGTCAGCAAGTAACTTCAGCTCCCCACAATAACTCTGAAAGGGAACAGACAGGAGGGGAGTTCCCTTCTATTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCATTTTGGCAAACTCAGTTCCGATGGAGTGGTTATTAGGAGTCGCAAGGATGTTGGTTTCTGCTATGCGTTTGTCGAATTTGAAGACATCACTGGTGTCCAAAATGCAATCAAGGCGGGTACTGCCCAGGTTGCTGGACGTCAAGTATACATTGAGGAGCGGAGAGCAAACAGCAACATCCCACACCGAGGAGGAAGAAGGGGTAGAGGAAGAGGGAGCTATCACACCGAGTCTTCGAAGGGACATTATAATTCTCGTAGTTACAGTTACAGTATGGGAGTTCGAGACGGAAGCGACCGTGAGTACATCAGACCAAGGGGCAACGGCTTCTATCGACCTACTACGCGACAGGAAAAAGGGAACGTAAGCCATCAAGTAACAAAAAATGGAGAAACTCCATCAGATTCATTATAG 1701 42.45 MGFPIMGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRETATAMLFVELCLTIHRLVDFMALLFLFCYLLMIHIQIHALVMSLSYTGIEIKTAHSLESWNGGVLVMVSGSVQMKNLNRMRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPAVLLSQSNLDSTLNASTTVPETVWSSGLSFDFLFGLGVTLGVDLIVLFICKSNVLYLYYLVSFMLITLPCNTLLNEVITFVVPNYSLNGAVQTREFAAPVVKENGHIDNHKFVEQQVQQVSEPKSIIEENTAEVNSMHQNTSTGSQDHFPVSVEEHAEEPQKHTYASILRVAKGQDVPAAIVAPQYPVSKETPPASEQNYTPPPTSQQVTSAPHNNSEREQTGGEFPSIDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFCYAFVEFEDITGVQNAIKAGTAQVAGRQVYIEERRANSNIPHRGGRRGRGRGSYHTESSKGHYNSRSYSYSMGVRDGSDREYIRPRGNGFYRPTTRQEKGNVSHQVTKNGETPSDSL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3684683 3688186 - ClCG05G003970.2 Cla05g00405 271895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00405 566 Pfam Nuclear transport factor 2 (NTF2) domain 19 162 IPR002075 -
Cla05g00405 566 Gene3D - 377 540 IPR012677 -
Cla05g00405 566 PANTHER OS02G0131700 PROTEIN 13 66 - -
Cla05g00405 566 PANTHER OS02G0131700 PROTEIN 92 195 - -
Cla05g00405 566 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 66 IPR039539 -
Cla05g00405 566 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 254 550 IPR039539 -
Cla05g00405 566 MobiDBLite consensus disorder prediction 363 395 - -
Cla05g00405 566 SMART rrm1_1 409 481 IPR000504 GO:0003723
Cla05g00405 566 ProSiteProfiles Nuclear transport factor 2 domain profile. 19 162 IPR018222 -
Cla05g00405 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 408 485 IPR000504 GO:0003723
Cla05g00405 566 MobiDBLite consensus disorder prediction 359 405 - -
Cla05g00405 566 CDD RRM_SF 410 481 - -
Cla05g00405 566 MobiDBLite consensus disorder prediction 487 566 - -
Cla05g00405 566 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 92 195 IPR039539 -
Cla05g00405 566 CDD NTF2 15 164 IPR018222 -
Cla05g00405 566 SUPERFAMILY RNA-binding domain, RBD 406 513 IPR035979 GO:0003676
Cla05g00405 566 MobiDBLite consensus disorder prediction 506 521 - -
Cla05g00405 566 MobiDBLite consensus disorder prediction 543 566 - -
Cla05g00405 566 PANTHER OS02G0131700 PROTEIN 254 550 - -
Cla05g00405 566 SUPERFAMILY NTF2-like 15 163 IPR032710 -
Cla05g00405 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 410 477 IPR000504 GO:0003723
Cla05g00405 566 Gene3D - 12 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00405 - - - bhj:120092942 584.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01536 Cla-Chr6:28956409 Cla05g00405 Cla-Chr5:3684683 1.49E-43 transposed
Cla05g00405 Cla-Chr5:3684683 Cla06g00133 Cla-Chr6:1490270 2.49E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00405 Cla_Chr05 FPKM 2.341022 2.291965 1.318378 1.035526 1.062265 1.437392 1.349163 2.530416 2.097036 2.639941