Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00409 ATGTGGCGCCGAGCCGGATTGATGCGAGGCCTAGGCGTTCGGCGGTTTTCAGAGGGCACTCGCCGTCGTATTGAGGACGAAGGAGACTGGTTCTACGCCTCAGAATGGTGGGGGAACGATCACGAAGGTGACGCCCCCTCAGTTTTCCGCTCAACATCTGAAAAGGGAAACGGCGTCGTCTCTGTTCTCGCATACCCTTCTTCCAGGCCCAATGGGCTTCATTGGCCAGGAACTGGACGGTGGCTTCAGCAAAGATATGCAGAGGTATGCTCTGGTCGCAAGAATGAGGGACGGTTTGGGATTCTTGGATATCAATGGCGGGTGCTTCGCTTCAATGACAATACTCGCCAAAGCACTGCCAAAGTTATGGCTGCTTACCAGGAATCAGAACCCGAGTCAATTTTCCTCATGCAGCAGGCGCATTGCTTGGCTGTTCCCTATCTGAAGAGTATGGTATCAGTTGGGTTGACCTCTATGGCATCTTGTGGTTATGGTCTTTTGAATGCAATACAAGGAAAACAAAATTTAAATATTTTATGCATTGGTCATGGTGGTGGAAGCTTACCTCTGTTTTTAGCAAGTAAAATTCAAGGTGCCAATGTTGACATAGTTGAAATTGATCCTCTTGTTATCTCAGCTTCAATTCAAGCCATGGGCTTCCCAGCTTTCTCAGTTATGACAGCATCAGGAGAGCGTGCGTTTGCCAAACCTAGATTCATTGATGACATCATGTGGAAAGGCATCCACGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCATCAGCAAAACGACCAATCTATACGACATGATCTTCATTGATGCTTATGATGGAGATGACATATTTCCACACAAACTCTGGGATCCAAATTCCACATTTCTTGACGCCCTCAGCAAGCGGGTTCATCCTAAACATGGGACTGTTGTGGTGAATCTTCACTCGGATTCCAATATCTTGAATCCAGATGGCTCTGTCCCATCTGTTCTTGAACATGTCTTGCCAATGGGGAAGTATGTATTTCGAATAGGGCGAGCATACAAGGATGTTTTGGTGGGAGATGAGAAAAGTTCTGGTTTGGGATTCACAGTGGCGGTTCCATGGGTTTGCAATACATCTCTAGTTGTGTGCAAAGGTTTCCAGATGAACTGTGAGTATCTTAATCGAGATTCAATAATGAACACACTGATATCCAAATCCCTTGAAGTAGAACATCTTCTAAAGCTGCCATTTTCATGCTTGGAGTATATTAAGAGAGTGTTGGCGCTCGATCCCCCGAAAGCAAAGTTCCCCTCTGCGTCTCTCATGGCGGTCAATGGCAAGAACCCATTGTCGCTCACCAGCGACGACGACGGCGACGCCGGTGTTCTTTCCAGGATATCACGTTCCGTATCCGAATCCTCGATCTATCGCCAATCCAAACGCGCCGCTTCAAATACCACATTCGTCACCAATAAGCTGTTGCGGAGCACGGGTAAGGCCGCCTGGATCGCCGGCACCACATTTCTCATCCTCGTTGTCCCGCTTATCATCGAGATGGATCATGAACAGCAGCTCAATGAGCTCGAGTTGCAGCAGGCCACCTTGCTCGGTGCTCTCGCCGTGTCAGTTCAAAATAGCCGTTTCGCCATGGTCAATGCCATATCGCCTGCACCATGGCTTGCAGAGCTCGATAATAATGCACGCCAAACCGCGGCATCTGGCATGAAAGGCATTGACATGGCTAACCTCTCAGCTTCTTTTAATTTCCCAGCTCTTCCCATTGCATCTATGAGACAAGTAAAATGCTCTAGTGTAGGTTCTACCCCATACTCCACGCTCATCCTTCTCAGCCACACTTCAATCTCACTAACTAAACGTGAATTGCAAAATGATGTCAGAATGGCTAAGAAGCTGTATTCATCAGGAGACATCCGGAAAGCTTTCATTGAATTGAATAGCTCAACCGTAGAGTTCTTATCTCCCTGCTGTGCATAA 1980 47.37 MWRRAGLMRGLGVRRFSEGTRRRIEDEGDWFYASEWWGNDHEGDAPSVFRSTSEKGNGVVSVLAYPSSRPNGLHWPGTGRWLQQRYAEVCSGRKNEGRFGILGYQWRVLRFNDNTRQSTAKVMAAYQESEPESIFLMQQAHCLAVPYLKSMVSVGLTSMASCGYGLLNAIQGKQNLNILCIGHGGGSLPLFLASKIQGANVDIVEIDPLVISASIQAMGFPAFSVMTASGERAFAKPRFIDDIMWKGIHERLFLYELDAEDFISKTTNLYDMIFIDAYDGDDIFPHKLWDPNSTFLDALSKRVHPKHGTVVVNLHSDSNILNPDGSVPSVLEHVLPMGKYVFRIGRAYKDVLVGDEKSSGLGFTVAVPWVCNTSLVVCKGFQMNCEYLNRDSIMNTLISKSLEVEHLLKLPFSCLEYIKRVLALDPPKAKFPSASLMAVNGKNPLSLTSDDDGDAGVLSRISRSVSESSIYRQSKRAASNTTFVTNKLLRSTGKAAWIAGTTFLILVVPLIIEMDHEQQLNELELQQATLLGALAVSVQNSRFAMVNAISPAPWLAELDNNARQTAASGMKGIDMANLSASFNFPALPIASMRQVKCSSVGSTPYSTLILLSHTSISLTKRELQNDVRMAKKLYSSGDIRKAFIELNSSTVEFLSPCCA 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3703133 3707788 + ClCG05G004000.1 Cla05g00409 271899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00409 659 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 17 419 - -
Cla05g00409 659 PANTHER OSJNBA0004N05.3 PROTEIN 17 419 - -
Cla05g00409 659 Gene3D Vaccinia Virus protein VP39 108 353 IPR029063 -
Cla05g00409 659 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 318 IPR029063 -
Cla05g00409 659 Pfam Mitochondrial import receptor subunit Tom22 476 527 IPR005683 GO:0005741|GO:0006886
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00409 - - - csv:101203692 791.956
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00409 Cla06g00699 CCT
Cla05g00409 Cla06g00699 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00409 Cla-Chr5:3703133 Cla06g00699 Cla-Chr6:8880390 5.05E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g781 . . . . . . . . . Cmo17g00137 . . . . . . . . . . . . . . Cla06g00699 Cam06g0750 Cec06g0756 Cco06g0768 Clacu06g0741 . Cre06g1500 . . Cone7ag0349 Cone4ag0362 Lsi05g01770 Csa02g01026 Chy05g00290 . . . . . . . . . Sed01g4263 . . Cma08g01058 Cma17g00137 Car08g00934 Car17g00120 Cpe12g00118 Cpe17g00219 Bhi12g01559 Tan06g2368 Cmetu06g0020 Lac12g2118 Hepe03g0315 . Lcy13g0411 Cla05g00409 Cam05g0446 Cec05g0454 Cco05g0454 Clacu05g0443 Cmu05g0421 Cre05g0483 Lsi09g01194 Csa03g01170 Chy06g00432 Cme05g00620
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010243 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00409 Cla_Chr05 FPKM 37.925541 35.294685 45.846157 41.095039 20.994352 23.296183 25.704729 27.929939 29.547243 36.52837