Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00413 ATGGGCTGGTTTACGGACTCTCTTCTTCCCCGATCTCTCCTTCCATCTCCGCTTCGTCTCGTGCTGCCGGTTGCTGACTGCCCCAACGTTGCCGTCCGCTGTCGGGGAGAATCGTGCTCTGCTGCTACTGCACTCGTAAACCTCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGATTACTCTTCGAGAAGCGCTTAATCGAGAGGCACATTTTGGACTATGGGAAATGCCCTGTTACAGGTGAACCGCTTTCCATTGATGACATTGTTCCAATTAAAACCGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCATTAGAACAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAGGAACGGGATGAGGCTAGGTCCTTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCGTCAACTTCATTTTCATCCAATGCTGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTCTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCAGGCATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTGGGCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGATCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCGGGATTATGCCTGACCCAGGTTGCAGAGGATTCACAAACGGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAAATTTGATGGACACGTTGGGGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCTGTGGACTTTGATCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGACATAAGGGAAGGCAACTTGTCTAAAATTTGGACCGGATGCAAAATACTTGGCAGTCGGGTCAATGGATCGAAATCTTCGAATCTTTGGTGTGCCTGGGGAAGATGGTGCGATGGAGGCATGAGTTTGCATCCAGAATCGAAATTTCCAGAACAGAAAAGATGGAAGCTAGTTTCTGATTATATTTGCACGATTAAAGGATTGATTTATGGTATTAAGCAACAAGATTCTGAAGCAGAGGCGTCTTTGGAAGGTTCTCCAGCAAACAAACAAGGACCAGAAAGTTCACCACTTTTGCGGATGAGTGTTCGAAGAGATATGCCATGTCTCAATGTACTGCCCTTCATTAGAAAGAAAGTGTCAGTGGAAATCAGAACAGAATCAACCGTGAGATTTGTCACAATCTTTTCTGGACTACGTTGGCAAGTTGCTTCTTCAAATACTTCAGAACTACTAGTACTCCTTCCAGAGACAGAGTCATCAAAATCTTCCTCATTGTCTCGAATGTCTTTGTTCTCACATACTGAACTGCATTCCAATGGTTCTAAAGAATCAAAACTGACAATATCATATGGCACAGGGCGAGGCTGA 2094 44.46 MGWFTDSLLPRSLLPSPLRLVLPVADCPNVAVRCRGESCSAATALVNLSGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSFSSNAAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEIQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVAEDSQTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVDFDHSGSYLAIAGSDIREGNLSKIWTGCKILGSRVNGSKSSNLWCAWGRWCDGGMSLHPESKFPEQKRWKLVSDYICTIKGLIYGIKQQDSEAEASLEGSPANKQGPESSPLLRMSVRRDMPCLNVLPFIRKKVSVEIRTESTVRFVTIFSGLRWQVASSNTSELLVLLPETESSKSSSLSRMSLFSHTELHSNGSKESKLTISYGTGRG 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3718628 3729586 - ClCG05G004030.2 Cla05g00413 271903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00413 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 335 IPR001680 GO:0005515
Cla05g00413 697 CDD WD40 267 512 - -
Cla05g00413 697 SUPERFAMILY RING/U-box 48 96 - -
Cla05g00413 697 SMART Ubox_2 47 109 IPR003613 GO:0004842|GO:0016567
Cla05g00413 697 Pfam WD domain, G-beta repeat 429 465 IPR001680 GO:0005515
Cla05g00413 697 Pfam WD domain, G-beta repeat 298 334 IPR001680 GO:0005515
Cla05g00413 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 474 IPR001680 GO:0005515
Cla05g00413 697 SUPERFAMILY WD40 repeat-like 265 502 IPR036322 GO:0005515
Cla05g00413 697 SMART WD40_4 468 513 IPR001680 GO:0005515
Cla05g00413 697 SMART WD40_4 296 335 IPR001680 GO:0005515
Cla05g00413 697 SMART WD40_4 383 424 IPR001680 GO:0005515
Cla05g00413 697 SMART WD40_4 251 293 IPR001680 GO:0005515
Cla05g00413 697 SMART WD40_4 427 465 IPR001680 GO:0005515
Cla05g00413 697 SMART WD40_4 341 380 IPR001680 GO:0005515
Cla05g00413 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 433 IPR001680 GO:0005515
Cla05g00413 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 335 - -
Cla05g00413 697 Coils Coil 156 176 - -
Cla05g00413 697 Pfam Prp19/Pso4-like 107 172 IPR013915 -
Cla05g00413 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 427 - -
Cla05g00413 697 ProSiteProfiles U-box domain profile. 48 113 IPR003613 GO:0004842|GO:0016567
Cla05g00413 697 PANTHER PRE-MRNA-PROCESSING FACTOR 19 29 504 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cla05g00413 697 CDD RING-Ubox_PRP19 48 97 - -
Cla05g00413 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 103 IPR013083 -
Cla05g00413 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 434 467 - -
Cla05g00413 697 Gene3D - 243 535 IPR015943 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00413 Cla-Chr5:3718628 Cla08g00899 Cla-Chr8:21472502 4.63E-09 dispersed
Cla05g00413 Cla-Chr5:3718628 Cla09g00656 Cla-Chr9:6239084 3.20E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00413 K10599 - csv:101204424 891.723