Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00417 ATGGCATGCTTTCAGAGAGCTTCACCAGCTTTGAAGGAGATCCTCCTTAAACTGTACAGTTTGGAGAAGCCCACTGAAATTGAACATCAATTGCATGAATTTGGTTCTGTTCAGTACCATATCAAGTCTTCCATATCAGAAGCACACCACATTTACTTGTCAATTGCCACTCCATTGTTGTCACAAGGGGTTCTTTTATCTGATGGGCTCTCACCGTACACTGTCGAGATGGTAAAACAAATTTGCTCTCATGCTGTTGATATCATTGAACCTGCAAAAGAAGGATACCAACTTACTCTAAGAATCGACTCTGCAAAAATTTTGCATGGGGAAGAGTCAGAAAAGATCATTACAGACATTGCTGCTGTCCAAGCAGTGATCATAAGTTCTCAGCTGAAAGAAATGTTGAGAAATGTTAATTCACCGGCTCCATTTCAAGGAAACTCCAGACCCATCAAACTTCCCCAAAAGATCCTCATAATCTACCCAATTCGTTTCAAGGAAGATACAGATGTGATCATTGCAACAGCTTTCTTTCGGGAACTTATGGATGTGGGAAGCTCTGAAAAATGGTCAAAAGCACCTCCCTGCTGTTGGTCACCCATACCCCCTCCAGAACTGAGAGGCGAACCTATAGAAGAATTGAGCACCAATGGAGGATTTGTCACCTTTGGTAAAAGACTTGACAACACTGTGTGGAGTTTGCTGAACTTTAATGCATATGTTAAGTACCATGTAAAGACAACCAAAGGTTTTATCCAGAGAAGGATGAGAAAGCGGTTAGAAGGGCTTGTTGAGATCCTACATCAGAAAACTTCAGATGATGCTGTACTCAACATGGGTCAAGGCATTATGTATATGAAGAAATTGGTAGCTAGAACTAGACGCATCAAACAGAAATGTCGTAGTTTGGGTAGGAAGATCAAGAGAATCCGATTTCGAATTCGAATCCCTGGATTTGCACGGTTTCGTCGAAGATGGCTGAAACATCAGTGGAGACATCTACAAGAACTGCTCTTTGATCTTCCACCCTTTTCATGGCAACTTCAATTGCTGCAACTGGACTTCATAAACCTCTTTCCTCCTCCTTCCATCATTGTGCTGATCAAGTCAGTCCCGGAAGTGGTTCGAGTTGCAAAGCCTGTAAGATTCAGGCCAATGATGAAGAATATTAATGAAGGGAAAGGTATATTTGCGCCTGTTGTTGTTCTTGCTCGAAATATTATTGGAAAGAAACGTTTCAATCAGTTGAGAGGCAAGGCCATTGCCCTGCACTCGCAGATAATTACTGAGTTCTGCAAATCTATAGGAGCTGATGCAAAGCAAAGGCAGGGATTGATTAGGTTAGCCAAGAAGAATGGAGAAAGATTAGGATTCCTTGCTTGA 1386 41.85 MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLLSQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDIAAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLPQKILIIYPIRFKEDTDVIIATAFFRELMDVGSSEKWSKAPPCCWSPIPPPELRGEPIEELSTNGGFVTFGKRLDNTVWSLLNFNAYVKYHVKTTKGFIQRRMRKRLEGLVEILHQKTSDDAVLNMGQGIMYMKKLVARTRRIKQKCRSLGRKIKRIRFRIRIPGFARFRRRWLKHQWRHLQELLFDLPPFSWQLQLLQLDFINLFPPPSIIVLIKSVPEVVRVAKPVRFRPMMKNINEGKGIFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3753717 3758092 - ClCG05G004070.1 Cla05g00417 271907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00417 461 Pfam Arp2/3 complex, 34 kD subunit p34-Arc 90 270 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
Cla05g00417 461 PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2B 1 321 - -
Cla05g00417 461 SUPERFAMILY Arp2/3 complex subunits 1 126 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cla05g00417 461 SUPERFAMILY Arp2/3 complex subunits 154 271 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cla05g00417 461 Gene3D - 152 282 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cla05g00417 461 Gene3D - 1 137 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cla05g00417 461 PANTHER ARP2/3 COMPLEX 34 KDA SUBUNIT 1 321 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00417 K05758 ARPC2; actin related protein 2/3 complex, subunit 2 - csv:101204911 559.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02535 Cla-Chr1:38989033 Cla05g00417 Cla-Chr5:3753717 2.64E-13 transposed
Cla05g00417 Cla-Chr5:3753717 Cla06g00692 Cla-Chr6:8834720 1.78E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g768 . . . . . Bpe14g01274 . . . . . Cma14g01837 . Car14g01645 . . . Bhi01g00686 Tan10g0647 . . Hepe05g1684 . Lcy11g1697 . . . . . . . . . Cone7ag0343 . Lsi05g01762 . . Cme06g00459 Blo02g00768 . . Bda13g00044 . . Bma02g00755 . . . Cmo14g01878 . . . . . . . . . . . . . Cla05g00417 Cam05g0455 Cec05g0462 Cco05g0464 Clacu05g0452 Cmu05g0430 Cre05g0491 . Csa03g01179 Chy06g00441 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009192 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00417 Cla_Chr05 FPKM 7.872385 8.170188 8.315762 8.651762 12.602794 10.658274 11.100918 45.694099 42.737514 45.14954