Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00418 ATGGATGGTGATTCTAAGGTTGTTAATGGGCGTAAAGAGAAGACTATGGACTCTGCGGCTACCGGCGAAGTTGGGAATCACAGTAACGGTGAAGATGACAGTGAATCGAATGCCCTATTGCCGCCGCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGATAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGTGATGTGAGCGACTCTGGGGACGAGGAGGCTGACTCTTGCAGCTGTATAATTATGTAG 288 48.96 MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3763551 3765149 + ClCG05G004080.1 Cla05g00418 271908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00418 95 MobiDBLite consensus disorder prediction 58 73 - -
Cla05g00418 95 PANTHER OS03G0138400 PROTEIN 6 95 - -
Cla05g00418 95 PANTHER LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC 6 95 - -
Cla05g00418 95 MobiDBLite consensus disorder prediction 21 35 - -
Cla05g00418 95 MobiDBLite consensus disorder prediction 1 95 - -
Cla05g00418 95 MobiDBLite consensus disorder prediction 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00418 - - - csv:101205158 175.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00418 Cla-Chr5:3763551 Cla08g00751 Cla-Chr8:19852369 4.43E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g767 . . . . . . . . . . . Cma14g01836 . Car14g01644 . . Cpe03g01537 Bhi01g00111 . . . . . . . . . . . . . . . . . Lsi05g01761 . . . . . Bda11g00645 . . Bpe13g00541 . . . . . . . . . . . . . . . . . . Cla05g00418 Cam05g0456 Cec05g0463 Cco05g0465 Clacu05g0453 Cmu05g0431 Cre05g0492 . . Chy06g00442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003341 2 1 2 2 1 1 2 1 1 1 1 1 1 0 1 2 1 2 2 1 1 2 2 1 2 1 2 3 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00418 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 1.119146 0.87822 1.668964 0.0 0.0 0.0