Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00425 ATGGAAGAGAGTAGCAGAGCCACCGCAATCCGTCAGCTGCAGGACGCGAAGCGATCATCGGGAAAATCTTACAACCAGATAGCGGAAGAGACTGGCCTCACTAACGTCTATGTCGCTCAGCTTCTCCGCCGTCAAGCACACCTTAAGCCTGAGACTGTCCCTAAGTTGAGGTCCGCCTTGCCTCAACTCACCGATGATCATATTCAAGAGATGATGCGCCCGCCAATGAGGTCCTACGATCCTCGTTTGATCCAAGAACCCTCAATTTACAGATTGAACGAAGCAGTTATGCATTTTGGCGAGAGTATCAAGGAAATTATCAACGAGGAGTTTGGCGATGGAATTATGTCAGCCATAGACTTCTACTGCTCAGTTGACAAGGTCAAGGGTGTCGATGGGAAGGATCGTGTTGTGATAACTTTTGATGGTAAATATTTGCCCTACACTGAGCAGAGCACATGGCTTCAAGACGACCATCGCTGGAAAGTTGAACGAGATTCTAAAGCTTGCAACATGGTTGCTCCAAGTTCTTTTGGCTTCCAAAGGTTTGTATGTGAATGTGATCGTGTCATGGCCAAGTTTGTCCTAGTCACATTCTTTTTCTACATATCCACGATTCATTCATCACAAAAAACCCTTCCTCTCTCGCCTGCTATGGCGTTATCCCTTCTTCGAGCTATGGCTTCCGCCTCCACCTCCACCGCCCGCCTCTCTCTTCTTCACAGACGCCTCTTCTCCTCCTCAACTACTCTTACACATCCTCCTTCACCCCCTTCTCTCATTCTCTGCCGTCGATCTCTCCCTCCGCTTTCTCATGCCGTTCGATCCATCCCTTCCGCCTCCAGGTTAACCTCGAGTCGTTGCCACGTCAATCGCTCAGGTAACTCGTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAGTGATCGTCCTCCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTATGAGCACTGGCTCATTGTCATGGACAAGCCTGGTGGTGAGGGTGCCACCAAGCAGCAGATGATTGATTGCTACATTCAGACCCTCGCTAAAGTTGTTGGCAGTGAAGAGGAAGCGAAGAAGAGGATTTATAATGTTTCTTGTGAGAGGTATTTTGGGTTTGGGTGTGAGCTTGACGAAGAGACCTCCAACAAGCTCGAAGGCTTGCCAGGTGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCTGAGTATAAAGACTATGGGGCTGAGTTGTTGGTGAATGGAGAGATTGTTCAAAGGTCACCAGAGAGACAGAGAAGGGTGGAACCACAGCCTCAGAGAGTTCAGGATAGACCAAAGTATACCGACAGGACCCGCTATGTGAGACGCAGAGAAAACATGAGGTGA 1380 48.84 MEESSRATAIRQLQDAKRSSGKSYNQIAEETGLTNVYVAQLLRRQAHLKPETVPKLRSALPQLTDDHIQEMMRPPMRSYDPRLIQEPSIYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVITFDGKYLPYTEQSTWLQDDHRWKVERDSKACNMVAPSSFGFQRFVCECDRVMAKFVLVTFFFYISTIHSSQKTLPLSPAMALSLLRAMASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLILCRRSLPPLSHAVRSIPSASRLTSSRCHVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELLVNGEIVQRSPERQRRVEPQPQRVQDRPKYTDRTRYVRRRENMR 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3805435 3812937 + ClCG05G004140.2 Cla05g00425 271915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00425 459 SUPERFAMILY lambda repressor-like DNA-binding domains 10 81 IPR010982 GO:0003677
Cla05g00425 459 Hamap Cyanate hydratase [cynS]. 1 168 IPR008076 GO:0008824|GO:0009439
Cla05g00425 459 MobiDBLite consensus disorder prediction 285 310 - -
Cla05g00425 459 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 322 405 IPR037045 -
Cla05g00425 459 TIGRFAM cynS: cyanase 11 149 IPR008076 GO:0008824|GO:0009439
Cla05g00425 459 Pfam Cyanate lyase C-terminal domain 83 149 IPR003712 GO:0009439
Cla05g00425 459 Gene3D - 85 150 IPR036581 GO:0009439
Cla05g00425 459 MobiDBLite consensus disorder prediction 1 24 - -
Cla05g00425 459 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC 226 459 - -
Cla05g00425 459 SUPERFAMILY Cyanase C-terminal domain 85 150 IPR036581 GO:0009439
Cla05g00425 459 CDD Cyanase_C 85 151 IPR003712 GO:0009439
Cla05g00425 459 SMART Cyanate_lyase_2 78 151 IPR003712 GO:0009439
Cla05g00425 459 MobiDBLite consensus disorder prediction 426 446 - -
Cla05g00425 459 MobiDBLite consensus disorder prediction 7 24 - -
Cla05g00425 459 Gene3D - 1 82 IPR010982 GO:0003677
Cla05g00425 459 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 226 459 IPR039206 GO:0016554
Cla05g00425 459 PRINTS Cyanase signature 37 54 IPR008076 GO:0008824|GO:0009439
Cla05g00425 459 PRINTS Cyanase signature 17 32 IPR008076 GO:0008824|GO:0009439
Cla05g00425 459 PRINTS Cyanase signature 86 100 IPR008076 GO:0008824|GO:0009439
Cla05g00425 459 PRINTS Cyanase signature 104 120 IPR008076 GO:0008824|GO:0009439
Cla05g00425 459 PRINTS Cyanase signature 136 146 IPR008076 GO:0008824|GO:0009439
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00425 - - - bhj:120084678 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00425 Cla-Chr5:3805435 Cla07g00955 Cla-Chr7:25729528 8.72E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g751 Blo01g00063 Blo12g00141 Bda03g01090 . Bpe04g00988 . Bma04g01015 Bma05g01248 . . Cma06g01306 Cma14g01830 Car06g01120 . . Cpe08g00349 Cpe03g01533 . . . . . . . . . . . . . . . . . . Lsi05g01752 . . Cme06g00469 . . . . Bpe05g01102 . . . . Cmo06g01313 Cmo14g01871 . . . . . . . . . . . . . Cla05g00425 Cam05g0462 Cec05g0470 Cco05g0471 Clacu05g0459 Cmu05g0438 Cre05g0499 . Csa03g01187 Chy06g00451 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00425 Cla_Chr05 FPKM 2.789598 2.99087 2.509078 3.436562 13.716395 8.598487 14.166383 4.402898 4.182155 3.829603