Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00426 ATGGCAGCTTCCGTAGTCTTCGGCTTCACGCCGGCCACTTCTTCCGGTGTAATTGCACCCTCCTCAACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAATCACTCGCTAATCTCCACCTCTCCCATTTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGA 450 45.11 MAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3814522 3815966 + ClCG05G004160.1 Cla05g00426 271916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00426 149 SUPERFAMILY L28p-like 74 146 IPR034704 -
Cla05g00426 149 Gene3D Ribosomal protein L28/L24 73 149 IPR037147 GO:0003735
Cla05g00426 149 PANTHER 39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL 25 149 IPR026569 GO:0003735
Cla05g00426 149 PANTHER 50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC 25 149 - -
Cla05g00426 149 Hamap 50S ribosomal protein L28 [rpmB]. 71 147 IPR001383 GO:0003735|GO:0005840|GO:0006412
Cla05g00426 149 Pfam Ribosomal L28 family 74 132 IPR026569 GO:0003735
Cla05g00426 149 TIGRFAM L28: ribosomal protein bL28 74 129 IPR001383 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00426 K02902 RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28 - csv:101205872 264.618
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g749 . . . . . Bpe14g01271 . . . . . Cma14g01829 . Car14g01641 . . Cpe03g01532 Bhi01g00705 . . . . . . . . . . . . . Cone14ag0166 Cone15ag0176 . . . . . Cme06g00470 . . . Bda13g00047 . . Bma02g00759 . . . Cmo14g01870 . . . . . . . . . . . . . Cla05g00426 Cam05g0463 Cec05g0471 Cco05g0472 Clacu05g0460 Cmu05g0439 Cre05g0500 . Csa03g01188 Chy06g00452 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013731 1 2 0 1 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 0 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00426 Cla_Chr05 FPKM 3.444639 3.429529 2.320924 2.440582 4.745215 4.464484 4.869434 1.449929 1.398954 1.632745