Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00427 ATGAAGAATACAGATGGATTTTGGCTTTACTCCGGCCGATTTCACTCGCCCGAGTCCCAATTTTGGCTGCCACTCGAACCAACCAAACAAACAAGCATTGTGAATACCGAATTGAATCGAATTGAATTGGCATTCAATTCAATAATGACAGAGGCAGAAGTTGGGTTGTTTAAACCGCTTTTGCATTTAGTAGCCATGTCTCAATCTGATGTCCCTCCCTCTCATCCATTTCCAGTTTCATTTAATCATTTCAATGGGAAACAGCTCGTCCTCCACTTTTGTAGTAATAGTTCCTTCTGTATTCGGGCGATTGTTGACTTAACAAATTATGCGTGTTCACACGTTGAAGGGAGCCTTGATGTGTATTTGTCAGGATTTCAGGTCTGTGCTTTTGACTTTCAATACAAAATTTGCACTGTGGCCATGAGAGCAAAGACCTGGATTGATGAACAAATTTTTGGGTTCAAGAGTAAATTCAGGAAGATGATAAATTGTATTCGCTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCGACTCGAGATTATTCAGCTAGTGGTTTTTCATCCCGAACTGGCGAGGTGGAACAAAAGGTGGATAATGGCAACATTGAAGAGGCCGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTACGAGGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATACGAACAAAATAGGCGCCAATCACAAAGTGATGTTGTGCCTACTATGTCGATGCATGCAATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCGGCAAAATCATGCAAACTAATTTTAGACACTGTTGAATCTTCATTCCCAGAAGGCTTACCTGAAAACTTTGCTAATGATTGTAAATTACAAGAGACATTAACGAAGGCTGTTGACTTACTTCCAGAATTGTGGAAATCTGCGGGTTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTACCAATGGAATTTGGGAATGGAAACCAGAGCAAAGATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTAATGCAAGTCCTCCAAATCTTCGTTCACAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAATTTATACTTGGATTGATTGTATGGGACCCGTCAATAATAGAGCATCTCTCGTTTGCACTGTCTATTTCAGGGGAATTTGGAGCTTTAGCTAATGAGGTTGAACAATTGCCTCCTGGAATTATAGCAAGAAAAGAAAAATACTGTATCCTAGCACTTTGTTACTATGGGGAAGGTAAAGGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAATAATATAGAGAACGTTGACTGCTTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGAGTGACATACACATTGAGAGTGCTGTCAGAGCTGCATGGTAAATGCCTCCAGATGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAATTTGTTGCTTCAGATTCTCAGAAAACTTTGAAGCAGTCTGAAGCACTCAAGGCGCTACAAACTGCTGAGCAACTGATGAAACAAAGAGATCCATTCATTGTTTACCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATTTTGCTCTATACTATGCAAAACAGCTAGTGAAACTTGAGGCCGGCTCTAGTATGAAGTCTTACATACTCTTGGCTAGAATATTGTCTGCCCAGAAACGGTTTGTGGATGCAGAGACTGTGCTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCCCAGGGCCAGCTAAAGAACGGTATAGAAACGTACAGTCATCTTCTTGCTATAATTCAAGTTCAGACCAAAAGTAGTGGAAAGATGCTTCCAAAGGATATGAGAAAATCTGACAGAAGTCTGGAAGTAGATACATGGCATGACTTAGCCAATATTTACACAAGCTTGTCTCAATGGCGGGATGCTGAGATCTGTCTGTCAAAATTGGAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTGCTCTACGAGTCGAAGGGTCATCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCAACTGCCTGTCTTCTCCAACAGCTGGGCTGCAGTCAGTCATTTCCTGTGGTGAGAAGCTTGCTAACGGATGCCCTTCGACTAGATCGAGCAAATCCATTGGCATGGTACAGTCTCGGGCTGCTATATAAAGCTGACGCTGGGGCATCGGCACTGGAGGTTGCTGAATGCTTTGAAGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2616 41.74 MKNTDGFWLYSGRFHSPESQFWLPLEPTKQTSIVNTELNRIELAFNSIMTEAEVGLFKPLLHLVAMSQSDVPPSHPFPVSFNHFNGKQLVLHFCSNSSFCIRAIVDLTNYACSHVEGSLDVYLSGFQVCAFDFQYKICTVAMRAKTWIDEQIFGFKSKFRKMINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESSFPEGLPENFANDCKLQETLTKAVDLLPELWKSAGSPEESILSYRRALLYQWNLGMETRAKIEKEFAIFLLYSGCNASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKFILGLIVWDPSIIEHLSFALSISGEFGALANEVEQLPPGIIARKEKYCILALCYYGEGKGLVALNLLKNFLNNIENVDCLLELLLASKLCGENLVCLDEGVTYTLRVLSELHGKCLQMASVANCLLGVLLSAMSKFVASDSQKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDFALYYAKQLVKLEAGSSMKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQTKSSGKMLPKDMRKSDRSLEVDTWHDLANIYTSLSQWRDAEICLSKLEAINPYSASKWHSTGLLYESKGHPRDALQAYNKALDIDPGHVPSLISTACLLQQLGCSQSFPVVRSLLTDALRLDRANPLAWYSLGLLYKADAGASALEVAECFEAATLLEESAPVEPFR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3816421 3821685 - ClCG05G004170.2 Cla05g00427 271917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00427 871 Gene3D Tetratricopeptide repeat domain 717 866 IPR011990 GO:0005515
Cla05g00427 871 SMART tpr_5 293 326 IPR019734 GO:0005515
Cla05g00427 871 SMART tpr_5 725 758 IPR019734 GO:0005515
Cla05g00427 871 SMART tpr_5 759 792 IPR019734 GO:0005515
Cla05g00427 871 SMART tpr_5 635 668 IPR019734 GO:0005515
Cla05g00427 871 SMART tpr_5 671 704 IPR019734 GO:0005515
Cla05g00427 871 Gene3D Tetratricopeptide repeat domain 199 715 IPR011990 GO:0005515
Cla05g00427 871 Pfam Tetratricopeptide repeat 766 791 IPR019734 GO:0005515
Cla05g00427 871 ProSiteProfiles TPR repeat profile. 759 792 IPR019734 GO:0005515
Cla05g00427 871 PANTHER PROTEIN NPG1 154 871 IPR043376 -
Cla05g00427 871 SUPERFAMILY TPR-like 581 699 IPR011990 GO:0005515
Cla05g00427 871 PANTHER OS10G0471400 PROTEIN 154 871 - -
Cla05g00427 871 SUPERFAMILY TPR-like 672 841 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01625 Cla-Chr8:28844733 Cla05g00427 Cla-Chr5:3816421 4.91E-180 transposed
Cla11g01623 Cla-Chr11:29915612 Cla05g00427 Cla-Chr5:3816421 0 transposed
Cla05g00427 Cla-Chr5:3816421 Cla07g00114 Cla-Chr7:1347521 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00427 K21843 - csv:101206105 1336.63