Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00440 ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA 264 42.8 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3933745 3936858 - ClCG05G004290.1 Cla05g00440 271930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00440 87 PANTHER SPLICING FACTOR SUBUNIT 1 87 - -
Cla05g00440 87 Pfam Splicing factor 3B subunit 10 (SF3b10) 5 82 IPR009846 -
Cla05g00440 87 PANTHER SPLICING FACTOR 3B SUBUNIT 5 1 87 IPR009846 -
Cla05g00440 87 PIRSF SF3B5 1 87 IPR017089 GO:0000398
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00440 K12832 SF3B5, SF3B10; splicing factor 3B subunit 5 - jre:108984696 183.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00440 Cla-Chr5:3933745 Cla01g02343 Cla-Chr1:37197830 1.83E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g723 . . . . . . . . . . . . Car06g01135 . . Cpe08g00337 Cpe03g01519 Bhi01g00722 . . . Hepe05g1661 . . . . . . . . . . . Cone7ag0328 Cone4ag0332 Lsi05g01737 . . Cme06g00484 . . . . . . . . . Cmo06g01327 . . . . . . . . . . . . . . Cla05g00440 Cam05g0478 Cec05g0488 Cco05g0488 . Cmu05g0453 Cre05g0515 . Csa03g01202 Chy06g00466 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003491 3 3 2 3 1 1 2 1 1 2 1 1 1 2 2 1 0 2 2 0 2 1 1 1 1 1 1 3 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00440 Cla_Chr05 FPKM 0.731123 0.433435 0.493014 0.953961 1.884424 2.338489 2.7512 0.666087 0.569269 0.631049