Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00447 ATGAGCGACGGATTCAAGAGAGATTATCAAATAATCGAAGAGATTGGCCGTGGAAGATTCGGTACCGTTTTCCGATGCACTTCCAGATCCTCCGGTGAAATCTACGCCGTCAAAATCATCGATAAGCTTCGGATCTCGGCCGGTGATTCACTCGACGCGGAATGTCTCGTTAACGAGACCAAGATTCTGCATCTCCTTTACCCTCACCCTCACATTCTCGCTCTGCATAATCTCTACGAAGACGAATCTCGCCTTCATATGGTTCTCGATCTCTGTTCCTCTTCCGATCTCCACCGTCGAATCACACTCCAGGTTTTTTCCGAAGCCGAGGCCGCAACGATTATGTCTCAACTGATGCACGCGGTGGCTCATTGTCACCGTCATGGCGTTGCGCATCGCGATATTAAACCAGACAATATTCTCTTCGACGAGTGGGGTTCGTTGAAACTGGCGGATTTCGGATCGGCGGATATGTTCAAGCAGGGAGAAGAGTCGATGAGCGGCGTCGTCGGAACACCGTACTACGTAGCGCCGGAAGTTCTAGCCGGAAAAGATTACGGCGAAAAGGTTGATATCTGGAGCGCCGGCGTCGTCTTGTACGTTATGTTAGCCGGTTTTCCACCGTTTCATGGTGAATCGGTTGTTGAGATCTTTCACGCGGTGTTGCGAGCTAATTTGAGATTTCCTTCCAGAGTTTTCCACTCCGTGTCTCCATCGGCAAAAGACTTGCTCCGGAAAATGCTCTGTAAAGACGTTTCCAGAAGAATCTCCGCGGAACAAGTCCTCAGACATCCATGGATTACCAGCTGCGTAGTAAACAGGCCAGCAACGGAACTAGGCTAA 843 50.06 MSDGFKRDYQIIEEIGRGRFGTVFRCTSRSSGEIYAVKIIDKLRISAGDSLDAECLVNETKILHLLYPHPHILALHNLYEDESRLHMVLDLCSSSDLHRRITLQVFSEAEAATIMSQLMHAVAHCHRHGVAHRDIKPDNILFDEWGSLKLADFGSADMFKQGEESMSGVVGTPYYVAPEVLAGKDYGEKVDIWSAGVVLYVMLAGFPPFHGESVVEIFHAVLRANLRFPSRVFHSVSPSAKDLLRKMLCKDVSRRISAEQVLRHPWITSCVVNRPATELG 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3987535 3988823 + ClCG05G004340.1 Cla05g00447 271937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00447 280 CDD STKc_CAMK 8 266 - -
Cla05g00447 280 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 4 271 - -
Cla05g00447 280 SUPERFAMILY Protein kinase-like (PK-like) 7 273 IPR011009 -
Cla05g00447 280 Pfam Protein kinase domain 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00447 280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cla05g00447 280 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00447 280 PIRSF ILK 4 264 - -
Cla05g00447 280 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 271 - -
Cla05g00447 280 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cla05g00447 280 SMART serkin_6 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00447 280 Gene3D Transferase(Phosphotransferase) domain 1 2 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00447 - - K08794 bhj:120087180 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00447 Cla-Chr5:3987535 Cla06g00958 Cla-Chr6:18106991 1.54E-110 dispersed
Cla09g00570 Cla-Chr9:5244434 Cla05g00447 Cla-Chr5:3987535 1.82E-23 dispersed
Cla05g00447 Cla-Chr5:3987535 Cla10g01715 Cla-Chr10:32926923 7.68E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g702 . . . . . Bpe14g01252 . . . . Cma06g01327 Cma14g01812 Car06g01140 Car14g01625 . Cpe08g00333 Cpe03g01516 . . . . . . . . . . . . . . . . Cone7ag0322 Cone4ag0328 Lsi05g01729 . . Cme06g00496 . Blo07g00261 . Bda13g00065 . . Bma02g00785 . . Cmo06g01331 Cmo14g01850 . . . . . . . . . . . . . Cla05g00447 . . . . . . . Csa03g01212 Chy06g00475 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001788 1 1 1 1 2 1 4 2 1 2 2 2 4 2 2 3 2 3 4 2 2 2 2 1 4 2 2 2 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80536 PF00069 Pkinase 2.20E-75 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00447 Cla_Chr05 FPKM 7.68062 7.641556 8.19545 9.027957 7.410289 7.108412 7.545983 10.105865 9.678054 11.074196