Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00448 ATGGGAAGAGAACAACTACAAGTGTTGAACGCACTTGATGTGGCCAAAACACAATGGTACCATTTCACAGCCATTGTGATAGCTGGAATGGGCTTTTTCACAGACGCATATGATCTATTTTGTGTATCTCTTGTTACCAAACTATTGGGTCGAATTTACTATCACAAAGAAGGCTCAGACAAGCCTGGTGAATTGCCTTCAAACATAGCCGCCGCTATAAACGGCGTCGCTTTCTGTGGAACCCTCTCTGGCCAACTCTTCTTTGGGTGGCTTGGTGACAAGATGGGCCGGAAACGAGTCTACGGAATGACCCTTATGCTTATGGTCATTTGCTCTGTAGCTTCCGGACTATCTTTCAGCAGCACCCCAACATCTGTGGTGGCCACTCTCTGTTTTTTCCGATTCTGGCTTGGATTTGGCATCGGCGGCGATTACCCACTTTCCGCCACCATCATGTCGGAGTATGCCAATAAAAGGACACGAGGGGCGTTCATTGCCGCTGTCTTTGCAATGCAAGGGTTTGGGATTTTGGCCGGTGGGGTGGTGGCAATAATTGTCTCTGCCGCATTTGACGCCAAATTCCCATCTCCATCGTATAAGGACAATCCCACCGCCTCAACCGTCCCACAAGCTGATTATGTGTGGCGAATTATTGTGATTTTTGGTGCCTTTCCCGCTCTACTCACTTATTACTGGCGAATGAAAATGCCTGAAACTGCTCGTTACACCGCCTTGGTTGCTAAAAATGCCAAACAAGCAGCCGCTGATATGTCTAAAGTTCTACAAGTTGAATTGGAATCAGAGCAGGAAAAAATCGACGAGGGAAAATCGAAGAATAATGACTTTGGGTTGTTCTCAATGAGTTTTGTTCGTCGGCATGGGCTTCACTTGCTAGGGACTACTACTACATGGTTCTTGTTAGACATTGCATTTTACAGTCAGAATCTATTCCAGAAGGACATTTTCACTGCCATTGGTTGGCTTCCTCCACCAGAGACGATGAACGCCATTGAAGAAGTTTTCAGAATCGCCAAAGCTCAAACCCTCATTGCATTGTGCAGTACAGTACCCGGGTATTGGTTCACTGTGGCGCTCATTGACGTAATGGGACGGTTTGCAATTCAATTGATGGGGTTTTTCTTCATGACGGTATTTATGTTCGCATTGGCCATTCCATACAAGCATTGGACTTTAGAAGCCAATAGAATTGGGTTTGTTGTGATGTATTCGTTGACGTTCTTCTTCGCAAATTTTGGGCCAAATGCCACCACTTTCGTGGTTCCAGCAGAGATATTTCCAGCCAGACTTCGATCGACGTGCCATGGAATATCGGCTGCTTCTGGAAAAGCAGGGGCAATTGTGGGGGCGTTTGGGTTTCAGTATGCTGAAAAGGGGATTGGAGTGAAGAAGACATTGATAATTCTTGGTGTTGTGAATGCTCTTGGTATGTTCTTCACTCTGTTGGTTCCGGAATCGAAGGGGAAGTCTTTGGAAGAAATGTCGGGTGAAGCTGGAGATGAGGCAGAGAGCAAAGCAGAGTCAAGGACTCAATCTGATCACAGAACTATGCCTGTTTGA 1578 46.2 MGREQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYHKEGSDKPGELPSNIAAAINGVAFCGTLSGQLFFGWLGDKMGRKRVYGMTLMLMVICSVASGLSFSSTPTSVVATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGGVVAIIVSAAFDAKFPSPSYKDNPTASTVPQADYVWRIIVIFGAFPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELESEQEKIDEGKSKNNDFGLFSMSFVRRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFTAIGWLPPPETMNAIEEVFRIAKAQTLIALCSTVPGYWFTVALIDVMGRFAIQLMGFFFMTVFMFALAIPYKHWTLEANRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFQYAEKGIGVKKTLIILGVVNALGMFFTLLVPESKGKSLEEMSGEAGDEAESKAESRTQSDHRTMPV 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3994632 3996209 - ClCG05G004345.1 Cla05g00448 271938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00448 525 MobiDBLite consensus disorder prediction 498 525 - -
Cla05g00448 525 Pfam Sugar (and other) transporter 25 501 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cla05g00448 525 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 494 IPR020846 GO:0022857
Cla05g00448 525 CDD MFS_PhT 25 493 - -
Cla05g00448 525 SUPERFAMILY MFS general substrate transporter 12 501 IPR036259 -
Cla05g00448 525 Gene3D MFS general substrate transporter like domains 20 266 IPR036259 -
Cla05g00448 525 Gene3D MFS general substrate transporter like domains 273 518 IPR036259 -
Cla05g00448 525 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 5 515 - -
Cla05g00448 525 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 5 515 - -
Cla05g00448 525 TIGRFAM 2A0109: phosphate:H+ symporter 11 503 IPR004738 GO:0005315|GO:0006817|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00448 Cla-Chr5:3994632 Cla08g00567 Cla-Chr8:17260734 0 dispersed
Cla05g00448 Cla-Chr5:3994632 Cla05g00449 Cla-Chr5:4011771 0 tandem
Cla05g00943 Cla-Chr5:9365619 Cla05g00448 Cla-Chr5:3994632 0 transposed
Cla11g01848 Cla-Chr11:32043831 Cla05g00448 Cla-Chr5:3994632 1.21E-180 transposed
Cla05g00448 Cla-Chr5:3994632 Cla06g00662 Cla-Chr6:8381823 0 wgd
Cla05g00448 Cla-Chr5:3994632 Cla07g00094 Cla-Chr7:1073527 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00448 K08176 - csv:101209582 931.398