Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00450 ATGTTTCGTATTTTTTGGTTTCGCAATTTTTGGGGAGATATTACCGGCGGCCGGAAGCGGCGGTGCGTGGTGAAAAGTGAAACGCGCCACCGTGGTGATGATGGACGGTTGAAGAGTGTATACGAAGTTGTATGGGGTCCCCGTCCGCGAGGACCAACTCAGAGCCTCACTTTAGAAATCTTCTTCCTTACCTTTCGTTCTTTAATGCCTTTTCCCTTTCTGCATCTGATTTTTCTTTCAGGGTTTTCTCCCAATTCCACTCAATCTTCTTCCAATCGAATATATTCTTCTTTTCCTCAATTCATCTGCCACCATTCTTTTCCACTTCACCAAGTGACAAACCAAATGGGCAAACACAAAACGCAATATAAAGCTACAGTTGATGTTCCATTTTGCTTCCTTTTCAAACACCCTTTCTCTCCCATTTCCAATTCTTCTTCTCCGCTTTTTCTTTCAGTTTCTCCTAGTCATGTTAGTTTTTCAAATCAACAAGCCGCTCAACATCCAAGGGATATCCATGGTCAGTATTCTGATCTTCTAAGGCTTCTCGAATTTGGTGGATTTCCTCCTCAGTCAAACTACTTGTTCTTGGGGGACTATGTAGATCGAGGAAAGCAGAGCGTAGAAACCATCTGCCTTCTCCTTGCATATAAAATAAAATATCCTGAAAACTTCTTCCTCTTGAGGGGCAACCATGAATGTGCATCTGTAAACCGTATCTACGGTTTTTATGACGAATGTAAACGTAGGTTTAATGTCAAACTGTGGAAAATATTCACCGACTGTTTCAACTGTTTACCCGTGGCTGCTCTAGTTGATGAAAAGATACTGTGTATGCATGGTGGGCTGTCTCCTCACCTTGACAGGTTAGATCAGATTAGGAATTTAAAGCGCCCTGCTGATGTTCCAGAATCAGGTTTACTCTGTGATCTCCTTTGGTCTGATCCAAGTGTAAATACACGTGGTTGGGGACCGAACGAACGAGGGGTTTCATACACCTTTGGTGCAGATCGAGTCATGGAGTTTCTTCGAAAACATGATCTTGATTTGATCTGTAGAGCTCACCAGGTCGTGGAGGACGGATACGAGTTTTTTGCAAATAGACAGCTTGTAACTTTGTTTTCTGCTCCAAACTACTGTGGAGAGTTTGACAACGCTGCTGCAATGATGCATGTGGATTCAAATTTAATGTGCTCTTTCCAAATATTAAAACCACCTGAAAAAAAGCCAAGGTTTGGGTTTGGCAGTATGTCATCGGGGCGATATGGCGGTCCGAAAAAAGTAAAGTCGTTTCTTGGCGCAATGGGCTGA 1311 42.94 MFRIFWFRNFWGDITGGRKRRCVVKSETRHRGDDGRLKSVYEVVWGPRPRGPTQSLTLEIFFLTFRSLMPFPFLHLIFLSGFSPNSTQSSSNRIYSSFPQFICHHSFPLHQVTNQMGKHKTQYKATVDVPFCFLFKHPFSPISNSSSPLFLSVSPSHVSFSNQQAAQHPRDIHGQYSDLLRLLEFGGFPPQSNYLFLGDYVDRGKQSVETICLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVKLWKIFTDCFNCLPVAALVDEKILCMHGGLSPHLDRLDQIRNLKRPADVPESGLLCDLLWSDPSVNTRGWGPNERGVSYTFGADRVMEFLRKHDLDLICRAHQVVEDGYEFFANRQLVTLFSAPNYCGEFDNAAAMMHVDSNLMCSFQILKPPEKKPRFGFGSMSSGRYGGPKKVKSFLGAMG 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4020410 4023277 - ClCG05G004360.2 Cla05g00450 271940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00450 436 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 170 429 - -
Cla05g00450 436 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 170 429 - -
Cla05g00450 436 ProSitePatterns Serine/threonine specific protein phosphatases signature. 228 233 IPR006186 GO:0016787
Cla05g00450 436 PRINTS Serine/threonine phosphatase family signature 347 367 IPR006186 GO:0016787
Cla05g00450 436 PRINTS Serine/threonine phosphatase family signature 165 192 IPR006186 GO:0016787
Cla05g00450 436 PRINTS Serine/threonine phosphatase family signature 369 385 IPR006186 GO:0016787
Cla05g00450 436 PRINTS Serine/threonine phosphatase family signature 261 287 IPR006186 GO:0016787
Cla05g00450 436 PRINTS Serine/threonine phosphatase family signature 290 317 IPR006186 GO:0016787
Cla05g00450 436 PRINTS Serine/threonine phosphatase family signature 194 221 IPR006186 GO:0016787
Cla05g00450 436 PRINTS Serine/threonine phosphatase family signature 227 251 IPR006186 GO:0016787
Cla05g00450 436 SUPERFAMILY Metallo-dependent phosphatases 171 409 IPR029052 -
Cla05g00450 436 Pfam Calcineurin-like phosphoesterase 171 357 IPR004843 GO:0016787
Cla05g00450 436 Gene3D - 170 416 IPR029052 -
Cla05g00450 436 SMART pp2a_7 144 407 IPR006186 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00450 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - csv:101209828 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00450 Cla-Chr5:4020410 Cla06g00920 Cla-Chr6:15241456 2.18E-146 dispersed
Cla05g00450 Cla-Chr5:4020410 Cla07g00334 Cla-Chr7:3937229 2.71E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00450 Cla_Chr05 FPKM 52.927811 59.968155 27.639387 30.321201 40.444458 44.404179 41.838501 31.088047 30.978701 30.387867