Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00451 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACCACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACCGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGTCGCCGGCCATGGGGAAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGCATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGGCGGCGGCAGTGATAGTATAGCTGAAGACGGCGGCTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCACTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 681 48.02 MDYSGFFSPVSDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGTSQSGSPCSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4029809 4030489 - ClCG05G004370.1 Cla05g00451 271941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00451 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cla05g00451 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Cla05g00451 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Cla05g00451 226 MobiDBLite consensus disorder prediction 63 84 - -
Cla05g00451 226 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Cla05g00451 226 PANTHER DNA-BINDING DOMAIN 27 217 IPR044808 GO:0003700|GO:0009873
Cla05g00451 226 MobiDBLite consensus disorder prediction 1 23 - -
Cla05g00451 226 MobiDBLite consensus disorder prediction 8 23 - -
Cla05g00451 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 217 - -
Cla05g00451 226 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Cla05g00451 226 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Cla05g00451 226 MobiDBLite consensus disorder prediction 53 84 - -
Cla05g00451 226 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Cla05g00451 226 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00451 Cla-Chr5:4029809 Cla09g00720 Cla-Chr9:7074746 1.38E-40 dispersed
Cla05g00451 Cla-Chr5:4029809 Cla06g00659 Cla-Chr6:8186126 4.26E-81 wgd
Cla05g00451 Cla-Chr5:4029809 Cla07g00093 Cla-Chr7:1058226 1.53E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61007 PF00847 AP2 2.60E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00451 K14516 - csv:101210326 355.14