Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00454 ATGGATTTCTTCACCAAAATCAAAACTTCCCAACATATTCCTCCATTTCCTCCCCCAAATCTCCCAAATCCATCCCATTCCAGCTTCCCCATTATCGCCATTGCCATTATTGGAATTCTCGCCACTGCCTTCTTGCTCCTCAGCTACTATATCTTCGTCATCAACTGTTGCCTCAACTGGCATCGCATCGATCTCCTCCGCCGCCTCTCCCCCTCCTCCACGCGGCGCCTCCCGTCTCCGACTGCCTACTCTCCGGCCCTCGAGACTCGGGGTCTGGACGAATCTGTAATTAGATCAATCCCTTTACTGCAATACAAGAAATCAACGGCGAAAGAAGAAACCTCATCTGAATGCGCCGTTTGTTTGAGCGAATTTGAAGAGGATGAGACGGTTCGAATTATTCCCATTTGTTCACATCTATTTCACATCGATTGCATCGACATTTGGCTGCAAAATAATCCCAATTGCCCACTCTGTAGAACCAGCATTTCCAGTTCTGCTCTGTTTCATCGATTTCCTCTGCCGAACTCCTTGCCGGAGGATCCAATCGGCGGCGGGAGTGAAAGGGATTTCGTAGTGATTGAATTGGGTGGAATTAGAAACGACCCATCTGGCCAATTTTCACAAGAGCGGGCGAATTCAGGGGAATTGCCGGCGGGGAAATCGGAACAGGGGAAAAAACGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAATGAAAGATGAGCAATTTTGCATTCAACCCATTAGACGCTCGGTTTCGATGGACTCGTCGGCGGAACGGCAGATGTATCTGGCGGTGCAGGCGGCGCTGCAGCAGAGCCGCCGTGGAAGTGCGGTTAGTCCCGGCGGCGATGGGTGTAATGGGAGAGGGAGGAGGTCTTTATTTTCTTTTGGAAATGGGAGGAGTTGTAGAAATGCTGTTCAAGTTCAACCACTTCGTTTGGAAGAGAATTAA 978 49.69 MDFFTKIKTSQHIPPFPPPNLPNPSHSSFPIIAIAIIGILATAFLLLSYYIFVINCCLNWHRIDLLRRLSPSSTRRLPSPTAYSPALETRGLDESVIRSIPLLQYKKSTAKEETSSECAVCLSEFEEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTSISSSALFHRFPLPNSLPEDPIGGGSERDFVVIELGGIRNDPSGQFSQERANSGELPAGKSEQGKKRRKLQKVTSLGDEWIDTRMKDEQFCIQPIRRSVSMDSSAERQMYLAVQAALQQSRRGSAVSPGGDGCNGRGRRSLFSFGNGRSCRNAVQVQPLRLEEN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4088274 4089251 + ClCG05G004378.1 Cla05g00454 271944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00454 325 PANTHER RING-H2 FINGER PROTEIN ATL16 17 321 IPR044600 GO:0016567|GO:0016740
Cla05g00454 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
Cla05g00454 325 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Cla05g00454 325 Pfam Ring finger domain 117 160 IPR001841 -
Cla05g00454 325 MobiDBLite consensus disorder prediction 202 232 - -
Cla05g00454 325 PANTHER RING-H2 FINGER PROTEIN ATL16 17 321 - -
Cla05g00454 325 SUPERFAMILY RING/U-box 99 166 - -
Cla05g00454 325 SMART ring_2 118 159 IPR001841 -
Cla05g00454 325 CDD RING-H2_PA-TM-RING 117 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00454 - - - bhj:120069649 582.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00454 Cla06g00655 CCT
Cla05g00454 Cla06g00655 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00454 Cla-Chr5:4088274 Cla09g01110 Cla-Chr9:12065622 2.34E-39 dispersed
Cla09g01565 Cla-Chr9:31119992 Cla05g00454 Cla-Chr5:4088274 1.84E-25 dispersed
Cla01g00582 Cla-Chr1:6579358 Cla05g00454 Cla-Chr5:4088274 7.65E-13 transposed
Cla06g01190 Cla-Chr6:25113307 Cla05g00454 Cla-Chr5:4088274 4.59E-12 transposed
Cla05g00454 Cla-Chr5:4088274 Cla06g00655 Cla-Chr6:8107040 4.05E-93 wgd
Cla05g00454 Cla-Chr5:4088274 Cla07g00092 Cla-Chr7:1038829 2.38E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g674 Blo01g00093 . Bda03g00844 . Bpe04g00798 . Bma04g00744 Bma05g01070 . Cmo17g00166 Cma06g01332 . . . . . . . . . . . . . Cla06g00655 Cam06g0700 Cec06g0705 Cco06g0713 Clacu06g0687 Cmu06g0678 Cre06g1447 Cone14ag0146 Cone15ag0155 Cone7ag0316 Cone4ag0321 Lsi05g01721 Csa02g01073 Chy05g00333 Cme06g00503 . . . . Bpe05g00861 . . . Sed02g1401 Cmo06g01336 . Cma08g01088 Cma17g00169 Car08g00963 Car17g00148 Cpe12g00145 Cpe17g00190 Bhi12g01632 Tan06g2420 Cmetu06g0958 Lac12g2188 Hepe03g0272 . Lcy13g0365 Cla05g00454 Cam05g0495 Cec05g0504 Cco05g0503 Clacu05g0490 Cmu05g0467 Cre05g0530 Lsi09g01242 . Chy06g00482 Cme05g00554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002450 1 1 1 2 2 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 1 2 2 2 2 2 2 3 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00454 Cla_Chr05 FPKM 7.296638 6.263002 10.308002 8.426517 6.24464 6.22673 7.781923 13.674598 13.388841 14.032702