Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00455 ATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCAAAGGTTGTGATAGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATGGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAATCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGGTATCATATTGTCATCTGTTGATGAACTGATTGACAAACTCAAAAATGAAGCTCATATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGTGGCAATCTTATTAACACTTCGCTCGATCCTTTGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGTCTGAAGAAAACGAGTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAACTTCGAAAGCTTGTCGCGAGAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGTCGTTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 1380 46.96 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVIDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHMDPLEDSSCWDFLDCSFFVDGGNLINTSLDPLDSCAETDVSAGRVESEENECSRKRARDGSCAGPTSKACRERFLDLSIALEPSRPTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKKRIEQQLKSVVVPPPGLIPGHPAAYHAAAPGKMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4093529 4101933 + ClCG05G004380.1 Cla05g00455 271945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00455 459 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 244 - -
Cla05g00455 459 CDD ETF_beta 2 205 IPR033948 -
Cla05g00455 459 Gene3D - 317 387 IPR036638 GO:0046983
Cla05g00455 459 Coils Coil 344 399 - -
Cla05g00455 459 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 250 IPR012255 GO:0009055
Cla05g00455 459 Pfam Electron transfer flavoprotein domain 26 208 IPR014730 -
Cla05g00455 459 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 157 177 IPR000049 GO:0009055
Cla05g00455 459 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA 1 250 - -
Cla05g00455 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 380 IPR036638 GO:0046983
Cla05g00455 459 Gene3D HUPs 1 249 IPR014729 -
Cla05g00455 459 SMART ETF_2 23 213 IPR014730 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00455 K03521 fixA, etfB; electron transfer flavoprotein beta subunit - csv:101210570 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00455 Cla-Chr5:4093529 Cla03g00482 Cla-Chr3:5344976 1.35E-27 dispersed
Cla05g00455 Cla-Chr5:4093529 Cla05g01539 Cla-Chr5:25681619 2.25E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g672 . . . . . . . . . . Cma06g01333 Cma14g01806 Car06g01144 . . Cpe08g00327 . . . . . . . . . . . . . . . . . Cone7ag0314 Cone4ag0319 Lsi05g01719 . . Cme06g00505 . Blo07g00255 Bda11g00625 . . Bpe13g00563 . Bma06g01596 . Cmo06g01337 Cmo14g01842 . . . . . . . . . . . . . Cla05g00455 Cam05g0496 Cec05g0505 Cco05g0504 Clacu05g0491 Cmu05g0468 Cre05g0531 . Csa03g01221 Chy06g00483 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002713 3 0 2 2 2 1 2 1 1 1 1 1 3 2 2 3 1 4 2 1 2 2 2 2 2 2 1 2 2 3 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00455 Cla_Chr05 FPKM 1.211396 2.736407 0.524965 0.904686 1.196253 0.824451 0.938382 1.17727 1.137742 1.573373