Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00459 ATGGATTACCTGAAATCAGTTGTACCTTCGCAACTTATTTCCGAACGAGGTTCAAATTTGGTAGTGATAAACCCTGGATCTGCAAATGTTAGGATTGGCCTTGCATCGCAGGATGCTCCCTTTAATGTTCCTCATTGCATTGCTCGCTATACCGATCAAGTGCCCAAGAGAAATGTTCAAGATCAGATGCTTAATTCGCAAGTTACAACTGCACAGCACATGGAGCGGGAGAGGGCATATGATGTAATTGCCTCGTTGCTAAAAATACCGTTTCTGGATGAAGAGGTTGCTAACAGTTCTTTCCCGCGGAAGATAGGACGAGTTGATGGACATAATATGCATAATGGCAAGAAGGATAGTGTCTTTAGTTGGACTGACGTACATGAGAGGGACCCTACTTCGCCAATGGCAGCGGAAAGTTCAAGCTCCAAGGATGTGAACCATGAGCCTTTGGACCAGCACGTAGATACTGATTCCAAGGAGCTTAGTCCTAGTGTAATCAAATATAGACAGTTTATTTGCGGTGAGGATGCTCTTAAAATATCACCCAGTGAGCCATATTGCCTGCACCGTCCTATTCGCAGAGGTCACTTGAATATCTCACAGCATTACCCTACACAACAGGTACTTGAGGACTTGCATGCTATTTGGGACTGGGTTTTGATAGAAAAATTGCATATCCCTCATAGTGAAAGAAACTTGTATTCTGCTATTCTGGTCGTCCCAGAAACATTTGACAACCGCGGGAAAAAGAACATGGTGGGAAAAAGAATTAACCAGCTTCTTTTACTTGGTGCCAATAGAAATAAAGGAGATGTTGACAATAGTATTGAGAGATTTGCGGTTTGGTTCAGCAGTGGTTCATCAGTTCCTTACGAAATGCAAGTAGTGACGTTGTGTACTGTGAATTGGCTCCTTCCAACTAGAGAAGGGCTTGCTGCAGTTTTTGGGAATGGACTATCTTCAGCATGTGTTGTTAACATGGGAGCACAGGTGACAACAATTATTTGCATCGAGGATGGAGTTGCCCTGCCTGCCACAGCAAAGACTTTGCCATTTGGTGGAGAGGACTTATCTAGATGCCTCCTGTGGACTCAAAGGCATCACCAAACTTGGCCACCAATTCGTACAGACATCTTGTCGAAGCCTGTAGATCTTCTGATGCTTAATAGACTGAAAGAGTCATACTGTGAGATTAGAGAAGGAGAGGTCGATGCCGTTGCTGTAGTTCATTCATATGAAGAAGGCACCCCTGCTGGTTCTCATAAAACTAGACTGACTGCACTTAATGTACCACCTATGGGTTTGTTTTTCCCAATGCTATTGGTTCCGGATGTGTATCCACCACCACCCCGTGCATGGTTTCATGACTATGAGGATATGCTGGAAGAGACATGGCAGACAGAGTACTCCAGAAGACCTGATGTACCAGATAATGTATATCCTGGCGTTAACGTTAATTTCCCAATGTGGGATAGCTACCCGGTTTATGCAACTAAACCAAAGAAAGAAGAGAAAGTTGGCCTTGCTGAAGCTATTGCAAGCAGTATCCTCTTAACAGGGCGAATTGACCTCCAGAGGAAACTGTTCTTAAGCATACAGTTAGTAGGTGGGGTGGCTTTGACAAGGGGTCTTATTCCTGCAATGGAGGAAAGAGTCTTGCATGCAATTCCTTCAAATGAAGCAATAGACACTGTTGAGGTGTTGCAATCAAGAACAAACCCTTCTTTTGTATCATGGAAAGGTGGAGCGATTATTGGAGTCCTTGACTTTGGGCGGGATGCTTGGATACATCGTGAAGACTGGATTAACAGTGGAATTTTTACTGGCAGTGGCAGAAAATACAAGGATTCTTACTATCTTCAAGCACAAGCGATGTGCTACATGAATTCCTAA 1896 43.83 MDYLKSVVPSQLISERGSNLVVINPGSANVRIGLASQDAPFNVPHCIARYTDQVPKRNVQDQMLNSQVTTAQHMERERAYDVIASLLKIPFLDEEVANSSFPRKIGRVDGHNMHNGKKDSVFSWTDVHERDPTSPMAAESSSSKDVNHEPLDQHVDTDSKELSPSVIKYRQFICGEDALKISPSEPYCLHRPIRRGHLNISQHYPTQQVLEDLHAIWDWVLIEKLHIPHSERNLYSAILVVPETFDNRGKKNMVGKRINQLLLLGANRNKGDVDNSIERFAVWFSSGSSVPYEMQVVTLCTVNWLLPTREGLAAVFGNGLSSACVVNMGAQVTTIICIEDGVALPATAKTLPFGGEDLSRCLLWTQRHHQTWPPIRTDILSKPVDLLMLNRLKESYCEIREGEVDAVAVVHSYEEGTPAGSHKTRLTALNVPPMGLFFPMLLVPDVYPPPPRAWFHDYEDMLEETWQTEYSRRPDVPDNVYPGVNVNFPMWDSYPVYATKPKKEEKVGLAEAIASSILLTGRIDLQRKLFLSIQLVGGVALTRGLIPAMEERVLHAIPSNEAIDTVEVLQSRTNPSFVSWKGGAIIGVLDFGRDAWIHREDWINSGIFTGSGRKYKDSYYLQAQAMCYMNS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4164072 4178300 + ClCG05G004420.1 Cla05g00459 271949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00459 631 Gene3D - 579 606 - -
Cla05g00459 631 Pfam Actin 309 606 IPR004000 -
Cla05g00459 631 SUPERFAMILY Actin-like ATPase domain 19 234 IPR043129 -
Cla05g00459 631 Gene3D - 130 335 - -
Cla05g00459 631 Gene3D - 12 129 - -
Cla05g00459 631 SMART actin_3 18 619 IPR004000 -
Cla05g00459 631 MobiDBLite consensus disorder prediction 145 160 - -
Cla05g00459 631 MobiDBLite consensus disorder prediction 104 160 - -
Cla05g00459 631 MobiDBLite consensus disorder prediction 107 126 - -
Cla05g00459 631 Gene3D Actin; Chain A, domain 4 341 442 - -
Cla05g00459 631 PANTHER ACTIN-RELATED PROTEIN 8 8 613 IPR027668 GO:0006338|GO:0031011
Cla05g00459 631 Gene3D - 507 578 - -
Cla05g00459 631 PANTHER ACTIN 8 613 IPR004000 -
Cla05g00459 631 SUPERFAMILY Actin-like ATPase domain 319 607 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00459 K11673 ACTR8, ARP8, INO80N; actin-related protein 8 - csv:101213005 1115.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g649 . . . . . Bpe14g01242 . . . . . . Car06g01148 . . Cpe08g00323 Cpe03g01507 . . . . . . . . . . . . . . . . . . . . . Cme06g00511 Blo02g00729 . . Bda13g00075 . . Bma02g00795 . . . . . . . . . . . . . . . . . Cla05g00459 Cam05g0500 Cec05g0514 Cco05g0514 Clacu05g0501 Cmu05g0477 Cre05g0541 . Csa03g01232 Chy06g00485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011275 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00459 Cla_Chr05 FPKM 4.691621 5.562083 3.856124 4.291048 4.051466 4.028459 4.318573 3.760148 3.311517 3.327219