Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00469 ATGGAGAGGAACTGTTTACGGACCGTGTATCGTACGAGTTTAACAACAATGAACGCGACGATCGGTGGAGGAGCCAGCCCCGCCAACACCGCCGTGAAAAGCCAGAGGAACAAGCTGTGCCGGGCGGCGGAGGAGGATTTCATAAATGGGATTTCATGGCCTCCAAGAAGTTACACGTGCAACTTTTGCAAAAGGGAATTTAGATCAGCTCAAGCTCTTGGTGGTCATATGAATGTTCATAGGAGAGATAGAGCCTTGCTCTATTCTCCCCCAGCTGATGGTCAGTTCACAAATCTCAACCTTAACCTTCACCATAACCCTAACCCTAATATCCCATCTCACGACGACGTTGCATTTGTTGGTCGAAAAGCTTCGGATTTGAAATCGTCAACCACGATGGCGGCAGAGATTGCAAAACCTAATATGTTTGACAGAGCTCATTGGAAGGAGGGTGAGAAATTCAATATTGGGTTGGACATTGAAATCAGTACAACTAATAATACTACTTCTTCTACCAATGTACTTACTGACTCCAAGAAGGACATTGATTTGGAGCTTCGATTAGGGTACTCAACTTAG 579 45.42 MERNCLRTVYRTSLTTMNATIGGGASPANTAVKSQRNKLCRAAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGRKASDLKSSTTMAAEIAKPNMFDRAHWKEGEKFNIGLDIEISTTNNTTSSTNVLTDSKKDIDLELRLGYST 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4279261 4279839 - ClCG05G004504.1 Cla05g00469 271959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00469 192 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Cla05g00469 192 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 32 191 - -
Cla05g00469 192 PANTHER OS07G0101800 PROTEIN 32 191 - -
Cla05g00469 192 Pfam C2H2-type zinc finger 58 82 - -
Cla05g00469 192 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Cla05g00469 192 Gene3D Classic Zinc Finger 51 90 - -
Cla05g00469 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Cla05g00469 192 SMART c2h2final6 58 80 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00469 - - - csv:101215415 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00469 Cla-Chr5:4279261 Cla06g00644 Cla-Chr6:7956208 1.76E-20 dispersed
Cla05g00469 Cla-Chr5:4279261 Cla09g01140 Cla-Chr9:12850263 2.63E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g642 . . . . . Bpe14g01236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00520 Blo02g00620 . . Bda13g00081 . . . . . . . . . . . . . . . . . . . . Cla05g00469 Cam05g0510 Cec05g0524 Cco05g0525 Clacu05g0511 Cmu05g0487 Cre05g0551 . Csa03g01241 Chy06g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012411 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61013 PF13912 zf-C2H2_6 5.80E-07 CL0361 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00469 Cla_Chr05 FPKM 7.636327 7.758057 5.267045 4.338765 5.605284 4.564002 4.853695 12.065006 12.174258 11.315723