Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00470 ATGAAACTTTCTCGTCTAAATTCCCTCCGGCGAGTTCAGTCCGGCGACCTTATCATGAAGCTCCCCGACGACCACGACGATTCCAAAAGACCCCAATTCCCTCTCGATTCCACCTCTTACAAAATCATCGACGAAATTGGGATCGGCGTCAGCGCCGTCGTGTACAAAGCTATCTGCATTCCGATGAATTCTGCAGTTGTGGCCATCAAAGCCATCGATCTCGATCGATCACGAGCCGATTTCGATGACATTCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCCAATATTCTAAATGCTCACTGTTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTAATGCCGTTCATGTCAGCTGGATCTTTACAGTCCATTATTACGTCATCGTTTCCCGATGGCTTGCCGGAACCCTGTATCGCCGTTGTTCTTCGGGAAATTCTACACGCTCTGTCTTACCTCCACGACCAAGGCCATCTCCACCGTGATATTAAAGCCGGCAACATTCTGATGGACTCAAATGGGTCTGTCAAGCTGGCTGATTTTGGAGTTTCGGCGTCGATTTTTGAGGCGAATTCAAAACAGGGGGTGTCAATTTCTCCACTATCGACATCGATGATGCTGAAGGAAGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTGATTCACTCCCACAATGGGTATAGTTTGAAAGCGGATATATGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGACCTCCTCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTCTCCGATTACGAGAACCACCGCAACTGCAAGAACAAGAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCCTCTTGCCTCGATCAAGAGCCATCGAGAAGACCCTGCGCGGAGAAATTGCTCAAACATCCGTTCTTCAAAAACTGCAAGGGACCTGATCTTCTCGTAAAGACAATATTACAAGGTCTACCCAGCGTTGAGGAGCGATTCAAATTGGGGAAATTACAGCGATTGCCGTCGATGAAAACTGAGGAAGAGGAGGAGGAAGAAGAATTAGAGAAGGAGATTATAAAACAGAGGAGGATAAGTGGGTGGAATTTCAATGAGGATGGACTAGAGCTGGACCCTGTTTTTCCAGGGGAAAACTGCGAGGAAGAATGCTCGATCATAGAGGAGAAGGGTTCGGGGGATTTGAGCGAGTGGTGTTCTGGGTTGTCGGATCTAAGTTCGCCGGTGGGGAACGAGAGGGGCAGCGGCGGTGGCGGAGGGGAGGAGGAGGTTGTTGACAGGGAATCGATAGTAGGGGGATTGGTGGCGCTGAAAAGGAGCTTAGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATAGAAGGGGAGAAAGGGGGAGAGATGAGCAGAGAGGAACAGATGGGGAGATTGATGGAGAAGATGACGAAGGAGTTGGAGAATGAGAGGAAGAGGAACTTTGAATTGGAAATGGAGTTGGAATTTCTTAGGCTTCAGATTTCTGCTGCTTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCATAATGGTGGTGGTGGTGCTTCAACCGCCATTAATAACTGA 1647 47.78 MKLSRLNSLRRVQSGDLIMKLPDDHDDSKRPQFPLDSTSYKIIDEIGIGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILHALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEANSKQGVSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHRNCKNKNKFSKGFKELVASCLDQEPSRRPCAEKLLKHPFFKNCKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGENCEEECSIIEEKGSGDLSEWCSGLSDLSSPVGNERGSGGGGGEEEVVDRESIVGGLVALKRSLDEQRRAVGSLIELIEGEKGGEMSREEQMGRLMEKMTKELENERKRNFELEMELEFLRLQISAAYNNNNNNNNNNNNNNNHNGGGGASTAINN 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4284570 4286216 - ClCG05G004506.1 Cla05g00470 271960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00470 548 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Cla05g00470 548 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Cla05g00470 548 Gene3D Transferase(Phosphotransferase) domain 1 122 372 - -
Cla05g00470 548 Coils Coil 481 515 - -
Cla05g00470 548 Coils Coil 347 374 - -
Cla05g00470 548 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00470 548 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00470 548 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Cla05g00470 548 MobiDBLite consensus disorder prediction 522 548 - -
Cla05g00470 548 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00470 548 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 24 525 - -
Cla05g00470 548 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 24 525 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00470 Cla06g00643 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00470 Cla-Chr5:4284570 Cla10g01223 Cla-Chr10:26876990 5.67E-10 dispersed
Cla07g00676 Cla-Chr7:14488772 Cla05g00470 Cla-Chr5:4284570 7.56E-48 transposed
Cla09g01858 Cla-Chr9:36281233 Cla05g00470 Cla-Chr5:4284570 6.84E-112 transposed
Cla10g00086 Cla-Chr10:867478 Cla05g00470 Cla-Chr5:4284570 7.86E-83 transposed
Cla11g01134 Cla-Chr11:23296140 Cla05g00470 Cla-Chr5:4284570 3.07E-50 transposed
Cla05g00470 Cla-Chr5:4284570 Cla06g00643 Cla-Chr6:7924745 9.48E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80537 PF00069 Pkinase 3.70E-59 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00470 K08835 - csv:101215648 898.656