Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00481 ATGGATTCCGGCATGGTCGTCTCAGACGGCACCCCTAAGGTCAAGAATGAAATCCACAATGAAGAGGAAAAGCTTCTCGTCCTTGCCCAAGATGGTGAGGTTAAGGAGATTGCTGTTTTGACCGAATTCAAGAAGAGGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCATTCTTTTACTACTACAATCTTTCTAAGAGGCAGATTAAGCAGTACAATGAAGTTGAGCTTTCTGCATTAGGAATGGCTATACCTACTGTGGTGACGATCGCCGAGATTCTGAAGAAGAATGGATTGGCATTTCAAAAGAACTTGACGATATCTTCTGTCAGTTTGAAGAATGGGGAAAGTGACAAGCTTGTTATGAAACCTAAGATTGAGATTGTACTGGTAAATGTAGAAAAGATCAAGAAAATTTCGACTGCTCCAACAAGTGAAGAATCTTAA 447 40.27 MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4344316 4345691 - ClCG05G004580.1 Cla05g00481 271971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00481 148 Pfam Alba 47 103 IPR002775 GO:0003676
Cla05g00481 148 PANTHER ALBA DNA/RNA-BINDING PROTEIN 23 145 - -
Cla05g00481 148 SUPERFAMILY AlbA-like 47 132 IPR036882 GO:0003676
Cla05g00481 148 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 23 145 IPR014560 -
Cla05g00481 148 Gene3D - 45 148 IPR036882 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00481 - - - csv:101216135 243.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00481 Cla-Chr5:4344316 Cla11g00267 Cla-Chr11:3095273 7.31E-29 dispersed
Cla05g00481 Cla-Chr5:4344316 Cla06g01092 Cla-Chr6:23597406 5.81E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g621 . . . . . . . . . . . Cma14g01783 . Car14g01604 . . Cpe03g01492 . . . . . . . . . . . . . . . . . . Lsi05g01677 . . Cme06g00538 Blo02g00610 . . Bda13g00088 . . . . . . Cmo14g01819 . . . . . . . . . . . . . Cla05g00481 Cam05g0523 Cec05g0536 Cco05g0537 Clacu05g0523 Cmu05g0495 Cre05g0561 . Csa03g01256 Chy06g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013882 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00481 Cla_Chr05 FPKM 2.523269 2.749244 3.923995 3.141136 4.698681 4.247894 5.164111 12.377953 12.46629 11.664935