Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00482 ATGGAGGAAACTTTCTTCGATCTTGTGGAGTTCCTCAAGAAGCCCTCAATTGCCGAAACATTCGTCGACATTTTGCTATGTGCAGTTCCGATCTGGCTCGCTGTTATGATCGGCCTCGTCATCGGTTGGTCCTGGCGTCCTCGCTGGACTGGATTGGTTTTCCTCGGCTTTCGGAGTAAGTTTAGATTATTGTGGACTGCTCCTCCTGGATTTGGAGCTCGGCGGCTTTGGTTGGCCTTCACGGCTCTATCTGCCTTCTCAGTCTGCCGTACTCTTTGGTCCAATTTTTATGAGAAGAGGAAGGCACCGCCGGTACCGCCAGCCCCGGATTCTCCGGTGCCATCCACGTTGATGCACTCGGCAGAAGGGAGCGGGGATGTAATTGCCAATAACGAGGAGGGAAGAGAGCAGGATATTGTTACGGAGAACGATTTAGATCACCTATTGCAACTTCTTGAAGGAAGAAATGGGGAGGCAGAATGGCAAAGTATGATGCAAAGGTCGACCCCAAACTTTGCATATGAAGCTTGGCGCCTTGAGCCTGAGATGTATATTAAGTTTCAACATCTTTCTTCTTCCTCTCACCAGAACAGACCAATTGTTTATCGTAGTAGAACTGTCTTTGAGGATGCAACCCCAGAGATGGTTAGAGACTTTTTCTGGGACGATGAGTTTCGGACTAAATGGGATCCCATGCTTACATATTTCAAGATATTGGATGAATGCCCTCATACAGGAACCATGATTGTTCACTGGATTAAGAAGTTCCCCTTTTTCTGCAGTGATAGAGAATATGTCATGGGTCGAAGAATATGGGAAGCTGCAAAGACTTACTATTGTGTTACAAAGGTAGATAGTACAACTTGTTCGAGGAATTTTCTCCTGCTACTCCATGTTGTATGTTCGGTCAAACCCATTTTAGAGTTAAGGGGCGTACAATATCCAAGCTTACCCAGACGTGACAAACCCAGGCGTGTGGATCTTTGTTTTTCAAGTTGGATCATCAGGGCAGTGGAGTCTCGTAAAGGAGATGGATTAAGGTCTGCTTGTGAGGTTATCCTTGTGCATTATGAAGATATGGGAATCCCCAAGGACGTAGCTAAGTTGGGAGTCCGTCATGGAATGTGGGGAACTGTCAAGAAGTTCCACTCTGGTTTCAGAGCATACCAGAATGCTAGGAAATCCGATATTTCTGTTTCCAGAAGCGCATTGATGGCCAGGATCACCACAAAGATTTCTTTCGAAAGAAACACAGATTCCTCAGAGCCAGAGTCTGGTGAAGTACGAACTCAAGTGGTGAGGAGAAAGCTCCAAAATGATGCTGGCATAGATTGGAAATGGATAGTCATTGGTGGGACAGTGGCTGTAGTCTGTGGACTTCGAACAGGTGCAATTGGGAAAGCCTTGTTACTTGGGGCAGGACAGAGAATGGCTCGAAGGTGA 1443 46.57 MEETFFDLVEFLKKPSIAETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGFRSKFRLLWTAPPGFGARRLWLAFTALSAFSVCRTLWSNFYEKRKAPPVPPAPDSPVPSTLMHSAEGSGDVIANNEEGREQDIVTENDLDHLLQLLEGRNGEAEWQSMMQRSTPNFAYEAWRLEPEMYIKFQHLSSSSHQNRPIVYRSRTVFEDATPEMVRDFFWDDEFRTKWDPMLTYFKILDECPHTGTMIVHWIKKFPFFCSDREYVMGRRIWEAAKTYYCVTKVDSTTCSRNFLLLLHVVCSVKPILELRGVQYPSLPRRDKPRRVDLCFSSWIIRAVESRKGDGLRSACEVILVHYEDMGIPKDVAKLGVRHGMWGTVKKFHSGFRAYQNARKSDISVSRSALMARITTKISFERNTDSSEPESGEVRTQVVRRKLQNDAGIDWKWIVIGGTVAVVCGLRTGAIGKALLLGAGQRMARR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4354773 4359101 + ClCG05G004590.2 Cla05g00482 271972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00482 480 CDD START_STARD2_7-like 140 389 - -
Cla05g00482 480 SUPERFAMILY Bet v1-like 145 390 - -
Cla05g00482 480 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 310 480 - -
Cla05g00482 480 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 1 283 - -
Cla05g00482 480 ProSiteProfiles START domain profile. 175 391 IPR002913 GO:0008289
Cla05g00482 480 PANTHER OS07G0185200 PROTEIN 310 480 - -
Cla05g00482 480 PANTHER OS07G0185200 PROTEIN 1 283 - -
Cla05g00482 480 Gene3D - 138 392 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00482 - - - csv:101216617 840.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00135 Cla-Chr1:1301378 Cla05g00482 Cla-Chr5:4354773 9.13E-109 dispersed
Cla05g00482 Cla-Chr5:4354773 Cla05g01291 Cla-Chr5:15519454 2.77E-26 dispersed
Cla05g00482 Cla-Chr5:4354773 Cla07g00787 Cla-Chr7:22045770 1.82E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g619 . . . . . Bpe14g01229 . . . . . Cma14g01782 Car06g01159 Car14g01603 . Cpe08g00311 Cpe03g01491 . . . . . . . . . . . . . . . . . . Lsi05g01676 . . Cme06g00539 Blo02g00607 . . . . . Bma02g00806 . . Cmo06g01352 Cmo14g01818 . . . . . . . . . . . . . Cla05g00482 Cam05g0525 Cec05g0538 Cco05g0538 Clacu05g0524 Cmu05g0496 Cre05g0563 . Csa03g01257 Chy06g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008740 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00482 Cla_Chr05 FPKM 214.69487 222.810425 390.913879 380.496887 192.566879 213.700974 183.957199 438.283813 460.595062 411.290741