Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00486 ATGGCTTTATTACACAGTCGTTTATGCCATGCCACGAACTTCTTCGACACATTTCAAACTTCCTTCTCTGAATTCCATGGCTCTCAAGTTTTACTGAAGTGCGGTTCGTCGATTGTCTTCAGAAACCGCTCTTTCTGCTCTCCGTTTTATGCTTTCACCACCGATACATTTTCCAATCGAATTTCGTATGGGAGTTTAGGTTCACGAAAACCCATTTCCCGATATAGTTTTGGGAGAAATGTATGTCGTGCTAGTTGGATAGATAGGTGGAACGAAACCGCGAAACAGAATCGCCCGAAACCACCTCGGGCTTTGTTGGATTATCCCAGTAGCGATGACAACGAAGTTTCAATTTCAAGTTCATCGAGGAGTTATAGAGATGGTAGTCGGATTGATGATGATGGAAGAGAGGGAAGTACAATGGAGAAGATTGTGAGGAAATTGAAGAAATTTGGGTACATAGACGATGAGAATAAAGAGAAGGGGCAAGAGAGAGCCATCGAAAAAGGGTCTGTGGAGGACATATTTTATGTTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTGAGGAATCGCCTCTGGGAGATGAGAACATGTTTGGAAGTAATGGGGAAGTTAGGTTTCCATGGGAGAAGCCAAAGGAAAAGGAAGACGGAGATGGGGATTCAACTAGGAGAAGGGGCAGGACATCTTTGGCAGAATTGACCCTTCCTGAGCCAGAATTGAGAAGGCTGAGGAACTTGACTTTCCAGAAAAAGCACAAGATGAAGATAGGCGGTGGAGGAGTGACTCAGGCTGTTGTGGATGTCATTCATGAAAAGTGGAAATCTTCAGAAATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCACTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACTGGTGGACTGGTTATCTGGAGGTCGGGAACTTCATTGTCTCTATATAGAGGTGTAAGCTATGAGCTCCCTGAAGCACCACAATTTAACAAACGGATTTACAAGAGAAATATGATCACTACCTTGTCTGGAACTGGTGGCAGTGCTATAGTTCCTTCTGAATATTCTTCTGGTCATGTATATGAGTCGCAACGAAAAAGAGCAGAAACTTCCACAGATGGTGAACAGTGCAGCGAACAATTGACAGAAGTACAAGTGAATTATGAGGATGAAGTAGATAAGTTACTGGATAGTTTGGGTCCAAGATACACAGACTGGCCAGGATTGGATCCTTTACCCGTTGATGCAGATTTGCTCCCAGGAGTAGTTCCTGATTATGAACCTCCATTTAGAATACTTCCCTATGGAGTGAGATCTTCTCTTGGAGTTAAGGAGGCTACAGCCTTAAGACGACTTGCCAGAAGACTTCCTCCTCATTTTGCCCTAGGCAGAAACAGGCAGCTGCAAGGTTTAGCCATTGCAATGGCCAAATTGTGGGAACGAAGTTCAATTGCAAAAATTGCCCTGAAACGAGGTGTGCAGCTGACTACTAGCGAGAGAATGGCTGAAGAGATCAAGAAATTGACAGGAGGCATTCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGAGGAAAGAGTTTCTTGTCGCCTGAGGTCACTGAAGCTTTGCTAGAAAGGGAGAGGCTGGCAAAGTCTCTACAAGATGAAGAAGAACAGGCTAGGTTGAAAGCGTCAGCCTTGGTGGTACCTGGCATTGAGAAAACAGAGCAATCTGGAACCGCAGGTTCTCTAGAGGAAACACTAGATGCCGATGCTAAATGGGGAAAGCCTCTAGATGATGAGCACAAGGAGAAAGTAATGCAGGAAGCTGAACGATTGAGGCACACTGACCTAGTCAGGAAGTTGGAACGGAAGCTTGCTTTTAATTCTGCTCTTGATATTGCAGCACTGGAGAATGTGAGATTTGATTTTGTCGATCTCCTGGCTGAAAGAAAATTAGTGAAAGCTGAGCAAGCATTATCTAAGGTAGAAGCATTTATGACACCGGCAAAGCTGGCTGCACCTGATAGCATAACTGAGGAGGAAAGATTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTAAAACAACTCCCTCCACCGTGTTCAATTATTCAGAATCTACAATCACTCACTGGAATGGTGTTATTTCAGGTAGGCGTGAAGTTTTTGATGGCACAGTGGAGAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCTAATTCCTTTGATCATGTCAAAAAAATTGCTTTGCAACTCGAAGCTGAGAGTGGAGGTGTCCTAGTTTCTATCGACAAAGTCTCCAAAGCATATGCTATAATTGTTTATCGAGGAAAGGATTATCAACGGCCATCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTAGCACGCTCGATCGAGCTTCAAAGGCACGAGGCTTTGCTGAAACATATATCAGCAATGCAGAGTAGAGTGGACAAACTAAAATCCGAAATCGAACAAATGGAGAAAGTGAGAGACCGAGGAGATGAAGTATTATACAATACACTGGATTCTGCTTATCCTACCGACAACGATTCAGAGGAAGAAGATTACGGTATATGTACCGAGGCATATGGTCAGAGTAGTGAAGTTGAAAATGAAGATAATATCATGGCTAGCGACGAGTACCTGGAAGGGGATTTTCCACATGGAATCCAAGTACAAGAATCTGAGGTCGAATATGAGACATCTGAATCACGTCACATATAG 2778 43.23 MALLHSRLCHATNFFDTFQTSFSEFHGSQVLLKCGSSIVFRNRSFCSPFYAFTTDTFSNRISYGSLGSRKPISRYSFGRNVCRASWIDRWNETAKQNRPKPPRALLDYPSSDDNEVSISSSSRSYRDGSRIDDDGREGSTMEKIVRKLKKFGYIDDENKEKGQERAIEKGSVEDIFYVEEGMLPNTRGGFSEESPLGDENMFGSNGEVRFPWEKPKEKEDGDGDSTRRRGRTSLAELTLPEPELRRLRNLTFQKKHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNMITTLSGTGGSAIVPSEYSSGHVYESQRKRAETSTDGEQCSEQLTEVQVNYEDEVDKLLDSLGPRYTDWPGLDPLPVDADLLPGVVPDYEPPFRILPYGVRSSLGVKEATALRRLARRLPPHFALGRNRQLQGLAIAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPGIEKTEQSGTAGSLEETLDADAKWGKPLDDEHKEKVMQEAERLRHTDLVRKLERKLAFNSALDIAALENVRFDFVDLLAERKLVKAEQALSKVEAFMTPAKLAAPDSITEEERFMFRKLGLRMKAFLLLGKTTPSTVFNYSESTITHWNGVISGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKAYAIIVYRGKDYQRPSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSRVDKLKSEIEQMEKVRDRGDEVLYNTLDSAYPTDNDSEEEDYGICTEAYGQSSEVENEDNIMASDEYLEGDFPHGIQVQESEVEYETSESRHI 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4406058 4410657 - ClCG05G004630.1 Cla05g00486 271976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00486 925 Gene3D - 445 541 IPR035920 -
Cla05g00486 925 Gene3D - 237 337 IPR035920 -
Cla05g00486 925 Gene3D - 716 803 IPR035920 -
Cla05g00486 925 SUPERFAMILY YhbY-like 724 799 IPR035920 -
Cla05g00486 925 MobiDBLite consensus disorder prediction 95 138 - -
Cla05g00486 925 MobiDBLite consensus disorder prediction 210 231 - -
Cla05g00486 925 ProSiteProfiles CRM domain profile. 444 541 IPR001890 GO:0003723
Cla05g00486 925 MobiDBLite consensus disorder prediction 193 235 - -
Cla05g00486 925 SMART CRS1_YhbY_2 446 530 IPR001890 GO:0003723
Cla05g00486 925 SMART CRS1_YhbY_2 239 322 IPR001890 GO:0003723
Cla05g00486 925 SMART CRS1_YhbY_2 678 789 IPR001890 GO:0003723
Cla05g00486 925 Pfam CRS1 / YhbY (CRM) domain 449 530 IPR001890 GO:0003723
Cla05g00486 925 Pfam CRS1 / YhbY (CRM) domain 724 789 IPR001890 GO:0003723
Cla05g00486 925 Pfam CRS1 / YhbY (CRM) domain 239 322 IPR001890 GO:0003723
Cla05g00486 925 ProSiteProfiles CRM domain profile. 676 800 IPR001890 GO:0003723
Cla05g00486 925 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1 702 IPR045278 GO:0000375|GO:0003729
Cla05g00486 925 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 724 921 IPR045278 GO:0000375|GO:0003729
Cla05g00486 925 ProSiteProfiles CRM domain profile. 237 333 IPR001890 GO:0003723
Cla05g00486 925 Coils Coil 539 559 - -
Cla05g00486 925 SUPERFAMILY YhbY-like 238 327 IPR035920 -
Cla05g00486 925 Coils Coil 820 854 - -
Cla05g00486 925 PANTHER CRM-DOMAIN CONTAINING FACTOR CFM3A, CHLOROPLASTIC/MITOCHONDRIAL 1 702 IPR033262 GO:0000373
Cla05g00486 925 PANTHER CRM-DOMAIN CONTAINING FACTOR CFM3A, CHLOROPLASTIC/MITOCHONDRIAL 724 921 IPR033262 GO:0000373
Cla05g00486 925 SUPERFAMILY YhbY-like 446 537 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00486 - - - bhj:120069423 1491.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01491 Cla-Chr3:30421974 Cla05g00486 Cla-Chr5:4406058 0 dispersed
Cla05g00486 Cla-Chr5:4406058 Cla10g01388 Cla-Chr10:28983727 1.26E-140 dispersed
Cla05g00486 Cla-Chr5:4406058 Cla06g01466 Cla-Chr6:28204565 3.77E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00486 Cla_Chr05 FPKM 0.0 0.0 0.0 1.089171 0.0 0.0 0.193939 1.362613 2.021549 3.000844