Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00493 ATGAAATCCCCAATCCGCCATTGCTCCTCTGCTCTCTTCTTCTTCATCATCATCATCATTTTCTCCTTCCATCACTCCGCCGCCCAAGGTCCCGACGCCGACGGCTACACCTGCTCCACCAACCAGACTGCCAACCCATGCCAGGCCTACGTCTTCTACCGAGCCGCCGCCCCCAATTTCCTCGACTTGGCTGCCATTGCTGACCTTTTCTGGGTCAGCCGCCTCGAAATTTCTCGCCTCAGCAACATCTCCGACTCCAACGCCACTTTTCCCCTCTTCTCCGGCCAGCCTCTCTTTGTTCCCATCACCTGCTCCTGCCACTCCGTCAACGCCTCCGTCAGCATCTCTTACGCCAATCTCTCCTACAAAATCAACGCCGGCGACAATTTCTGGCTCGTCTCCACCTCCAAATTTCAGAATCTCACCACTTTCCAATCCGTCGAAATCGTCAATCCCACTTTAAACCCAACCAATCTTTCAATCGGAGTCGACGTCGTTTTCCCCATCTTCTGTAAGTGCCCTAATCCCACCCAACTCCATAATCGCGTCAATTTCATGGTCTCTTACGTGATTCAGCCCGCCGACAGTCTGTCCTCCATAGCTTCAAGGTTTGGAGTACAAACATCGGAAATCACAGCCGCGAATTGGCCAAACCCGCAGCCATTCGAGACGATTTTCATCCCGGTGAGTCGTCTTCCCAATTTGACACAGCCCATTGTGTTGCCCCCGTCTCCAGAGCAGGCGCCGGCCCCGGCGGGAGAAGGGAAAAACAGAGCAGTGACAGGGCTGGCGATTGGGATGGGGATTGTTGGGTTTTTGCTGATCTCAGTGGTGGGTTTGTGGGTTCGTGGAGTGGGGAAGAGGAGGAAGAAGGAGAGGGAAATGGAGGAGGGATATGAGAAACAGAGAGTGCAGGATATTGGGATTTGGAAAGGGAAAGGGAAGGAAATGGAGGTGGATTTAATGGCGGATGTATCGGATTGTTTGGATAAATACAGAGTGTTCAAAATTGAGGAGCTTAATGAAGCGACTGATGGATTCAGTGAGAGTAGCTTGATTCAAGGGTCGGTTTATAAAGGGAACATCGGCGGAGTTGAATATGCTATCAAGAAGATGAAGTGGAATGCCTATGAACAGCTCAAGATCTTGCAGAAGGTAAACCATGGCAATCTAGTGAAGCTTGAAGGCTTTTGCATTGATCCTGAAGATGCAACCTGCTACCTAATTTATGAATATGTAGAGAATGGTTCTCTTTATTCATGGTTACATGGAAGCCAAAAGCAGAAACTAAACTGGAGAATGAGATTGAGAATTGCGATCGATGTCGCGAACGGACTACTATACATCCACGAGCACACGAGGCCGCGAGTTGTTCACAAAGACATAAAAAGCAGCAACATTTTGCTGGATGCAAACATGAGGGCTAAGATAGCCAACTTTGGGTTGGCAAAGTCAGGGTGCAATGCCATAACTATGCACATTGTTGGAACTCAAGGCTACATAGCACCCGAATACATAGCCGATGGAGTCGTGTCAACAAAGATGGACATCTTCTCGTTTGGAGTTGTTCTGCTCGAGCTGATCTCTGGGAAGGAGGCTGTTGACGACGAAGGAGGGGTTCTATGGATGAGCGCCAGTAGTGGGTTTTTGGTAGGGAAGGAGAAGGAGAAGTTGGAAAGATTGAGGAGTTGGATTGATGAAGCTCTTTTCGAGCAATCGTGCCCAATGGAGAGTTTGATGGATGTGATGAATGTGGCTGTTAGTTGCTTGCAGAAGGACCCAACGAAGAGGCCGAGCATGGTCGAGGTGGTTTATGCCCTAAGCAAGACCGATGAGGCCGTGTTCGATTTCTCTGATGATAATTTATCAGCTCCTCCCTTAACAGCTAGCGTGGCGGTCGTGGCGCATGGCAGTGTCGCAGTTGTGGCAGGATTGACCAAGACATGTGAGCAAAATCGTGGACCAGTCGTCTTCCTTCAATTTCACCGTTCTCCAACAGCCTCTTCCTCCTCCTCCTTCCACCACCACCTCTGCCATTCCAAAGCATCGCGCAACAGCCAGAGCCGAAGCCAGATGCAGAGCCACATGTTTCTGAGTCAACATCAATGCTCGCTCTTACGCCTTTCTCCGCCGCCACTTCCTCGATTCCATCGGCACATTCCGTTTTCGACTTCCAGAACCTTGCCATGTCACTTTACGTGGACCGACCACTCGGATTTTAATGCTTGTCCTCTCATGGTTAGTGGAGGGATATGGGATGGCTGTTCTCAAAGGAAACATGATCGGGTACAGACTTCAATGTGTACAAGCTGCTCAAATGATGAGAATGCCAGTGTGTATAGAGTTAACCAAAACATTTTTTCTGAGGCTATCCAAGCTAAAGTTGCGGTCAAAGTTGTATTTGCATGTTGCCTTTTCAGCTTGACACAAGTTACCTCTGTTAAATCTATAGCCAAAACTGTCCTAGAGATATTCCCCTTTGACGTTCAAAATTTTGGAGCATTTAGCTCGCCATTTGCATGTGTATCTAATACCTTGAATAAACCGACACCCCTTCAATTGGATGTATACATGCCTGCTTTTCGAGATATCAGATGGAGTTTCGCACGACTGATATACCTATTCAACATTCAAATGGAGAGAAATGTTGGCACGTTCTTAGTGGTGCTCCTTGTGGCATGCATCTCATTTATTTTGATCGGTGGTTTCCTGTTCTTCAAGCTCAGAGGTAGCACCCAATCTCTGGAGGACTGCTTATGGGAAGCATGGGCATGTCTATGTTCATCATCCACTCACTTGAAACAAACAACACGAGTGGAACGTGTTATAGGCTTCATTCTTGCCATATGGGGCATATTATTTTACTCTCGTCTACTCAGCACAATGACAGAACAGTTTAGGCATAACATGCAAAGACTGAGGGAAGGTGCACAAGTTCAAGTTCTGGAATCCGATCACATCATCATTTGTGGTGTCAATAGTCATTTGACTTTTATACTGAAGCAGCTAAACAAATACCACGAGTTTGCTGTTCGCTTAGGCACTGCAACTGCTAGGAGACAGAGAATTCTTCTCATGTCTGATCTTCCAAGAAAACAAATGGACAAGTTAGCTGATAATATCGCAAAAGATCTTTACCACATTGATGTTCTTACGAAGAGTTGTAGTCTTAGCTTAACAAAATCATTTGAAAGAGCTGCTGCCAGTATGGCACGAGCGGTTATTATACTGCCAACAAAAGGAGACCGGTATGAAGTCGATACAGACGCATTTCTCACCGTTCTTGCCCTTCAACCCATTGCAAATATGGACTCCATCCCAACTATTGTTGAGGTTTCTAGTTCCAACACATGTGAGCTCTTGAAGTCAGTCACAGGACTGAAAGTAGAGCCGGTGGAGAATGTTGCCTCTAAACTATTTGTCCAATGTTCTCGTCAAAAGGGGCTCATAAAAATTTACAGACACTTGTTGAACTATCGGAAAAATGTATTTAATCTATTCAATTCCCCCAATTTTGTTGGTCTAAATTATAAAGAATTACGCCAAGGATTTCATGAGGCAGTTGTGTGTGGTATCTATAGAAATGGGAAGATACACTTCCATCCAAATGATGATGAGATTCTGCAGCAAAATGACAAGATTCTGTTCATTGCACCTCTCCTTGGAGGACATAAGGGAACGGATAGTCATTCAAATGTGACCAAAGAAGGAAGTAATACCATTAAAAAGCTGGAAAGTATTAAAAACAATAATGTAGGTTTACATGAATCTCTGGAAACAGATAGAAAGGGATTTGAGAATATCATCAAACATCCAACAAAACCTTCTTTCAAGGCTTCAAAGTGGACTGTGGGACCGAAAGAATGCATACTTTTGCTTGGTTGGCGGCCAGATGTTGTAGATATGATTGAAGAATATGATAACTATCTTGGACCTGGTAGTGTATTGGAAATTTTATCAGATGCATCATTTGAAGAAAGAAAGAGGGCTAATAAAGCTGCAGACCACAAGAAGTTAAAAAATGTCAGAGTTTCTCACAGGATAGGAAATCCCATGGACTACGATACCTTAGAGGAAACTTTAATAAATATTAAGAGTTCTTTCAATGAAAACGAAGATGTTCCTTTATCCATTGCGGTGATATCCGACAGAGAATGGCTTCTTGGGGATCCATCTAGGGCGGACAAACACTCAGTATATACTCTTCTCCTTGCTGAAAGTATCTGTAAAAAGCATGGAGTTAAGGTACAAAATCTTGTTGCGGAGATTGTTGACTCCAAATTGGGAAAACAAATAACCAGAATAAAACCTTCCCTGACATACATTGCAGCAGAGGAAATAATGAGTCTTGTCACAGCTCAAGTGGCTGAGAATAGTGAATTGAATGAAGTATGGAAAGATATTTTAAATGCAGAGGGTGACGAAATTTATGTGAAGGATATCAGTGGCTACATGAAACAAGGGGAGAATCTCTCATTTTCAGAACTTTCTGAAAGAGCGCATCTAAAGCAAGAAGTTGCCATTGGCTATGTTAAAAACAATGGGAAGGTAATCAATCCCATTCCGAAGTCTGAACCGCTTTCTCTTGAATTGACAGATTCGTTAATCGTTATATCAGAGCGTGAATGA 4629 44.63 MKSPIRHCSSALFFFIIIIIFSFHHSAAQGPDADGYTCSTNQTANPCQAYVFYRAAAPNFLDLAAIADLFWVSRLEISRLSNISDSNATFPLFSGQPLFVPITCSCHSVNASVSISYANLSYKINAGDNFWLVSTSKFQNLTTFQSVEIVNPTLNPTNLSIGVDVVFPIFCKCPNPTQLHNRVNFMVSYVIQPADSLSSIASRFGVQTSEITAANWPNPQPFETIFIPVSRLPNLTQPIVLPPSPEQAPAPAGEGKNRAVTGLAIGMGIVGFLLISVVGLWVRGVGKRRKKEREMEEGYEKQRVQDIGIWKGKGKEMEVDLMADVSDCLDKYRVFKIEELNEATDGFSESSLIQGSVYKGNIGGVEYAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCIDPEDATCYLIYEYVENGSLYSWLHGSQKQKLNWRMRLRIAIDVANGLLYIHEHTRPRVVHKDIKSSNILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELISGKEAVDDEGGVLWMSASSGFLVGKEKEKLERLRSWIDEALFEQSCPMESLMDVMNVAVSCLQKDPTKRPSMVEVVYALSKTDEAVFDFSDDNLSAPPLTASVAVVAHGSVAVVAGLTKTCEQNRGPVVFLQFHRSPTASSSSSFHHHLCHSKASRNSQSRSQMQSHMFLSQHQCSLLRLSPPPLPRFHRHIPFSTSRTLPCHFTWTDHSDFNACPLMVSGGIWDGCSQRKHDRVQTSMCTSCSNDENASVYRVNQNIFSEAIQAKVAVKVVFACCLFSLTQVTSVKSIAKTVLEIFPFDVQNFGAFSSPFACVSNTLNKPTPLQLDVYMPAFRDIRWSFARLIYLFNIQMERNVGTFLVVLLVACISFILIGGFLFFKLRGSTQSLEDCLWEAWACLCSSSTHLKQTTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQRLREGAQVQVLESDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQMDKLADNIAKDLYHIDVLTKSCSLSLTKSFERAAASMARAVIILPTKGDRYEVDTDAFLTVLALQPIANMDSIPTIVEVSSSNTCELLKSVTGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLFNSPNFVGLNYKELRQGFHEAVVCGIYRNGKIHFHPNDDEILQQNDKILFIAPLLGGHKGTDSHSNVTKEGSNTIKKLESIKNNNVGLHESLETDRKGFENIIKHPTKPSFKASKWTVGPKECILLLGWRPDVVDMIEEYDNYLGPGSVLEILSDASFEERKRANKAADHKKLKNVRVSHRIGNPMDYDTLEETLINIKSSFNENEDVPLSIAVISDREWLLGDPSRADKHSVYTLLLAESICKKHGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEIMSLVTAQVAENSELNEVWKDILNAEGDEIYVKDISGYMKQGENLSFSELSERAHLKQEVAIGYVKNNGKVINPIPKSEPLSLELTDSLIVISERE 1542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4476295 4495478 - ClCG05G004690.2 Cla05g00493 271983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00493 1542 Pfam Protein kinase domain 369 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00493 1542 Gene3D Phosphorylase Kinase; domain 1 317 412 - -
Cla05g00493 1542 Pfam LysM domain 189 218 IPR018392 -
Cla05g00493 1542 SUPERFAMILY TrkA C-terminal domain-like 1170 1219 IPR036721 GO:0006813
Cla05g00493 1542 Gene3D LysM domain 186 228 IPR036779 -
Cla05g00493 1542 ProSiteProfiles LysM domain profile. 187 233 IPR018392 -
Cla05g00493 1542 PANTHER ION CHANNEL POLLUX-RELATED 700 1542 IPR044849 GO:0006811
Cla05g00493 1542 SMART LysM_2 188 228 IPR018392 -
Cla05g00493 1542 SMART LysM_2 121 168 IPR018392 -
Cla05g00493 1542 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 700 1542 - -
Cla05g00493 1542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Cla05g00493 1542 Gene3D Transferase(Phosphotransferase) domain 1 413 621 - -
Cla05g00493 1542 CDD LysM 187 215 IPR018392 -
Cla05g00493 1542 ProSiteProfiles Protein kinase domain profile. 305 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00493 1542 SUPERFAMILY Protein kinase-like (PK-like) 331 607 IPR011009 -
Cla05g00493 1542 Gene3D - 978 1129 - -
Cla05g00493 1542 SUPERFAMILY Voltage-gated potassium channels 871 1008 - -
Cla05g00493 1542 Pfam Castor and Pollux, part of voltage-gated ion channel 1133 1225 IPR010420 -
Cla05g00493 1542 SMART serkin_6 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00493 - - - csv:101217088 1554.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01264 Cla-Chr2:26616769 Cla05g00493 Cla-Chr5:4476295 4.05E-101 dispersed
Cla03g01611 Cla-Chr3:31931790 Cla05g00493 Cla-Chr5:4476295 7.39E-94 dispersed
Cla05g00493 Cla-Chr5:4476295 Cla08g01520 Cla-Chr8:27975392 6.25E-77 dispersed
Cla08g00584 Cla-Chr8:17657027 Cla05g00493 Cla-Chr5:4476295 2.70E-10 dispersed
Cla11g01319 Cla-Chr11:26699989 Cla05g00493 Cla-Chr5:4476295 1.01E-15 dispersed
Cla05g00493 Cla-Chr5:4476295 Cla01g01591 Cla-Chr1:30596290 1.45E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010595 1 0 1 0 0 1 2 0 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80538 PF00069 Pkinase 3.20E-38 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00493 Cla_Chr05 FPKM 0.081671 0.036459 0.087556 0.0 0.086172 0.107432 0.247635 0.067814 0.0 0.1211