Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00494 ATGGAGACGGGGCTCCGGCCAACGCTCGCCGCAGCTCCACCTTCCACCGGCGCCACCCTTCTCGGAAAGTACCAATTAGGCCGCCTTCTCGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACGGTCGGCGCCGCTCTTGAACATTGCATAGTCCGAGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGAGGCGAACTCTTCGCCAAAATCTCCCGCCGCGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTCGTCTCAGCCCTCAAGTTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGCCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGCGGATACGACGGTGGAAAGGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTATCTCCCTTTCGACGACAGCAACCTAGCGGGGATGTACAAGAACATCCACCGGCGAGAATTTCAAATCCCTAATTGGATATCGAAACCGGTCCGATTCCTAATATATCATCTCCTCGATCCGAATCCCAAAACGAGAATGAGCATTGAGACGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCAATTGAAACAGAGTAATGAAAGTTTATTGCAACCGATGAGGGATTATCGATCGGGGACAGAGAGGGGAATTAGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAAAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTGAAGGAGATGGGCGGAGAGTTGGGGTACAAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAGTGGTGAAGGTGGCGGTGGCTCCGGTGACGTTGACGATGGTGGAGAACAAAAGGCGGGGATTTAATGTCCAGAAATTAAAGATGATAAACCTGAAAATGGCACCGTGTTCTTCCCTCCCCGTTCTCTCTTTCAATCCAATCCCCAAAATCATCTTCAAATCTTCTCAAATCAGTGCTACAGAGTTTTCGAATCAAGTAATTCCGGGAAGCAACGGAATCTCCGCCTCCAAGTTGCTCGGAAAATTGACGAGGAGAAGCCTCTTGCGGCGGCTGAATGCGGCAGGGTTGTCCGAGATTGAACTCGACTTAAACGAAGATCCTGTAGATCGTTGGGAAACCAACAGTGTCAGCCCTAAACTCTTTGAAATTTGGATGTTAGAATCTTCAAGAACTTGCGTCTATTTTGTATTAAGTCTTCTGTTTAGGCTGAGTGGAATGTGGATTCAATCCATGGAGAATTCCAAGCTTGAAATTTTGCTATCTCATAAGTCCTTTAAAGATCTTATTTCGATGTTTTGTTATATGGCCAGAACTAATTTTGAAATTTTGAAAACACTTAAAACCGAACTAATGTTTAGATCTTTTTCACAAGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGGGGGGAGTATCTATACATTGGAGCAGCTATATTTACAGTAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAGCCACACAACTTTGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTTAATGAGAAGTATGGAGACTTGTGGGATTTCACCGTCAAGAACGATGATATAACTAAGACATGA 2046 49.51 METGLRPTLAAAPPSTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTVGAALEHCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGYLPFDDSNLAGMYKNIHRREFQIPNWISKPVRFLIYHLLDPNPKTRMSIETLMQNPWFKKSLQLKQSNESLLQPMRDYRSGTERGIREMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVKEMGGELGYKVEAGAKGGAIGMGKGRVVVVVEVVKVAVAPVTLTMVENKRRGFNVQKLKMINLKMAPCSSLPVLSFNPIPKIIFKSSQISATEFSNQVIPGSNGISASKLLGKLTRRSLLRRLNAAGLSEIELDLNEDPVDRWETNSVSPKLFEIWMLESSRTCVYFVLSLLFRLSGMWIQSMENSKLEILLSHKSFKDLISMFCYMARTNFEILKTLKTELMFRSFSQEHSGEPLQMILLQLDPQQAFRGEYLYIGAAIFTVVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4499662 4504823 - ClCG05G004710.2 Cla05g00494 271984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00494 681 Pfam NAF domain 312 367 IPR004041 GO:0007165
Cla05g00494 681 PANTHER SERINE/THREONINE KINASE 16 402 - -
Cla05g00494 681 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00494 681 Gene3D Transferase(Phosphotransferase) domain 1 110 303 - -
Cla05g00494 681 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Cla05g00494 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cla05g00494 681 Pfam Protein kinase domain 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00494 681 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 402 - -
Cla05g00494 681 Gene3D Kinase associated domain 1, KA1 308 422 - -
Cla05g00494 681 SUPERFAMILY Protein kinase-like (PK-like) 21 306 IPR011009 -
Cla05g00494 681 Gene3D Phosphorylase Kinase; domain 1 26 109 - -
Cla05g00494 681 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Cla05g00494 681 CDD CIPK_C 314 374 - -
Cla05g00494 681 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00494 Cla06g00622 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00494 Cla-Chr5:4499662 Cla02g01867 Cla-Chr2:33855379 7.61E-125 dispersed
Cla04g00641 Cla-Chr4:20796259 Cla05g00494 Cla-Chr5:4499662 1.17E-08 transposed
Cla05g00494 Cla-Chr5:4499662 Cla06g00622 Cla-Chr6:7606407 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80539 PF00069 Pkinase 1.30E-68 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00494 K12761 - csv:101217555 655.595