Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00494 | ATGGAGACGGGGCTCCGGCCAACGCTCGCCGCAGCTCCACCTTCCACCGGCGCCACCCTTCTCGGAAAGTACCAATTAGGCCGCCTTCTCGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACGGTCGGCGCCGCTCTTGAACATTGCATAGTCCGAGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGAGGCGAACTCTTCGCCAAAATCTCCCGCCGCGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTCGTCTCAGCCCTCAAGTTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGCCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGCGGATACGACGGTGGAAAGGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTATCTCCCTTTCGACGACAGCAACCTAGCGGGGATGTACAAGAACATCCACCGGCGAGAATTTCAAATCCCTAATTGGATATCGAAACCGGTCCGATTCCTAATATATCATCTCCTCGATCCGAATCCCAAAACGAGAATGAGCATTGAGACGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCAATTGAAACAGAGTAATGAAAGTTTATTGCAACCGATGAGGGATTATCGATCGGGGACAGAGAGGGGAATTAGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAAAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTGAAGGAGATGGGCGGAGAGTTGGGGTACAAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAGTGGTGAAGGTGGCGGTGGCTCCGGTGACGTTGACGATGGTGGAGAACAAAAGGCGGGGATTTAATGTCCAGAAATTAAAGATGATAAACCTGAAAATGGCACCGTGTTCTTCCCTCCCCGTTCTCTCTTTCAATCCAATCCCCAAAATCATCTTCAAATCTTCTCAAATCAGTGCTACAGAGTTTTCGAATCAAGTAATTCCGGGAAGCAACGGAATCTCCGCCTCCAAGTTGCTCGGAAAATTGACGAGGAGAAGCCTCTTGCGGCGGCTGAATGCGGCAGGGTTGTCCGAGATTGAACTCGACTTAAACGAAGATCCTGTAGATCGTTGGGAAACCAACAGTGTCAGCCCTAAACTCTTTGAAATTTGGATGTTAGAATCTTCAAGAACTTGCGTCTATTTTGTATTAAGTCTTCTGTTTAGGCTGAGTGGAATGTGGATTCAATCCATGGAGAATTCCAAGCTTGAAATTTTGCTATCTCATAAGTCCTTTAAAGATCTTATTTCGATGTTTTGTTATATGGCCAGAACTAATTTTGAAATTTTGAAAACACTTAAAACCGAACTAATGTTTAGATCTTTTTCACAAGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGGGGGGAGTATCTATACATTGGAGCAGCTATATTTACAGTAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAGCCACACAACTTTGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTTAATGAGAAGTATGGAGACTTGTGGGATTTCACCGTCAAGAACGATGATATAACTAAGACATGA | 2046 | 49.51 | METGLRPTLAAAPPSTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTVGAALEHCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGYLPFDDSNLAGMYKNIHRREFQIPNWISKPVRFLIYHLLDPNPKTRMSIETLMQNPWFKKSLQLKQSNESLLQPMRDYRSGTERGIREMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVKEMGGELGYKVEAGAKGGAIGMGKGRVVVVVEVVKVAVAPVTLTMVENKRRGFNVQKLKMINLKMAPCSSLPVLSFNPIPKIIFKSSQISATEFSNQVIPGSNGISASKLLGKLTRRSLLRRLNAAGLSEIELDLNEDPVDRWETNSVSPKLFEIWMLESSRTCVYFVLSLLFRLSGMWIQSMENSKLEILLSHKSFKDLISMFCYMARTNFEILKTLKTELMFRSFSQEHSGEPLQMILLQLDPQQAFRGEYLYIGAAIFTVVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT | 681 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4499662 | 4504823 | - | ClCG05G004710.2 | Cla05g00494 | 271984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00494 | 681 | Pfam | NAF domain | 312 | 367 | IPR004041 | GO:0007165 | |
Cla05g00494 | 681 | PANTHER | SERINE/THREONINE KINASE | 16 | 402 | - | - | |
Cla05g00494 | 681 | ProSiteProfiles | Protein kinase domain profile. | 24 | 282 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g00494 | 681 | Gene3D | Transferase(Phosphotransferase) domain 1 | 110 | 303 | - | - | |
Cla05g00494 | 681 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524 | |
Cla05g00494 | 681 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672|GO:0006468 | |
Cla05g00494 | 681 | Pfam | Protein kinase domain | 24 | 282 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g00494 | 681 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 16 | 402 | - | - | |
Cla05g00494 | 681 | Gene3D | Kinase associated domain 1, KA1 | 308 | 422 | - | - | |
Cla05g00494 | 681 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 306 | IPR011009 | - | |
Cla05g00494 | 681 | Gene3D | Phosphorylase Kinase; domain 1 | 26 | 109 | - | - | |
Cla05g00494 | 681 | ProSiteProfiles | NAF domain profile. | 308 | 332 | IPR018451 | GO:0007165 | |
Cla05g00494 | 681 | CDD | CIPK_C | 314 | 374 | - | - | |
Cla05g00494 | 681 | SMART | serkin_6 | 24 | 282 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g00494 | Cla06g00622 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00494 | Cla-Chr5:4499662 | Cla02g01867 | Cla-Chr2:33855379 | 7.61E-125 | dispersed | |
Cla04g00641 | Cla-Chr4:20796259 | Cla05g00494 | Cla-Chr5:4499662 | 1.17E-08 | transposed | |
Cla05g00494 | Cla-Chr5:4499662 | Cla06g00622 | Cla-Chr6:7606407 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80539 | PF00069 | Pkinase | 1.30E-68 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00494 | K12761 | - | csv:101217555 | 655.595 |