Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00496 ATGCAGAAGAGAGACCAGAATAAGTTGGGTGGTAATGTTAGTGGCGGCGCATCGGCGCCTCCGGCCAAACGAGGCCGTCCATTCGGCAGTGTAAACAGCAATGCTGCCGCTGCAGCAGCAGCAGCCGCCGCCGCTGCCGAGAACTCGGCTCCATCAGCACTCCTTGGCCCTTCTCTCCATATTCATACTTCCTTTGCTGATCAAAACAATAAAAGGATAGTGTTGGCTCTACAGAGTGGATTGAAGAGTGAATTGACGTGGGCACTTAACACTCTCACTCTGCTCTCCTTCAAAGAGAAGGATGATATGCGTAGAGACTCTACTCCTCTGGCTAAAATTCCCGGCTTGCTCGATGCTCTTCTTCAAGTTATAGATGATTGGCGTGATATAGCACTTCCGAGGGATCTTGTAAAGAAGCAAAGGGTCAGAACATTAGGTGCAAATTCTTCTGTAACGGGGTTTGGGAATGAATTTGAGGCACTTGGTTCAAATGGCCGGAGACCTGGTTCTTCTGCTTCCGAGGCAACGGTTCATCCTTCTAAACCATCTCCTCGACATTGGTGGCTTGATGAAGATGGTCTATTTAATCTGGATGACGAAGGCCGAGCAGAAAGACAGCAATGTGCTGTTTCTGCTTCAAACATCCTCCGAAATTTTTCCTTCATGCCAGAGAATGAATCTATTATGGCTCAACATCGACATACTCTGGAAACAGTGTTTCAATGTATAGAGGATCATTTTACCGAGGATGAAGAACTTGTTACCAATGCACTAGAGACAATAGTAAATTTAGCCCCGCTGCTCGATCTTCGTATTTTTAGCTCATCTAAACCATCCTACATCAAAATAACAGAAAAACGTGCAGTCGAAGCTATCATGGGAATGCTGGGATCTGCTGTCAAAGTTTGGCACTGTGCTGCTGCAGAATTACTTGGACGATTGATTATAAATCCTGATAATGAGCCTTTCCTTCTACCATTTGTCCCCCAGATTCACAAGCGCTTAGTTGATCTAATGAGCATCCCAGCATTAGATGCATCAGCAGCAGCTGTTGGTGCACTGTATAACCTCGTCGAAGTGAATATGGACTGTAGAATAAAGCTGGCAAGTGAACGATGGGCGATCGATCGACTTCTTAAAGTAATCAAGATGCCTCATCCAGTTCCAGAAATTTGCAGAAAAGCAGCAATGATATTGGAGAGCCTTGTTTCTGAGCCACAAAACAGGGGATTGCTCTTAGCATATGAAAATGCTTTTGCAGAAATACTCTTCTCCGATGGAAGATATTCAGATACATTCGCTAGGATATTGTATGAACTAACATCCAGACCAAACAATAAAGTTGCTGCTGCTCAAGGTGTATGGGGCATGTGA 1374 44.98 MQKRDQNKLGGNVSGGASAPPAKRGRPFGSVNSNAAAAAAAAAAAAENSAPSALLGPSLHIHTSFADQNNKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRRDSTPLAKIPGLLDALLQVIDDWRDIALPRDLVKKQRVRTLGANSSVTGFGNEFEALGSNGRRPGSSASEATVHPSKPSPRHWWLDEDGLFNLDDEGRAERQQCAVSASNILRNFSFMPENESIMAQHRHTLETVFQCIEDHFTEDEELVTNALETIVNLAPLLDLRIFSSSKPSYIKITEKRAVEAIMGMLGSAVKVWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSIPALDASAAAVGALYNLVEVNMDCRIKLASERWAIDRLLKVIKMPHPVPEICRKAAMILESLVSEPQNRGLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVAAAQGVWGM 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4529201 4531804 - ClCG05G004730.1 Cla05g00496 271986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00496 457 SUPERFAMILY ARM repeat 107 433 IPR016024 -
Cla05g00496 457 MobiDBLite consensus disorder prediction 1 30 - -
Cla05g00496 457 Gene3D - 196 453 IPR011989 -
Cla05g00496 457 MobiDBLite consensus disorder prediction 159 183 - -
Cla05g00496 457 PANTHER BRG-1 ASSOCIATED FACTOR 250 BAF250 1 457 IPR021906 GO:0006338|GO:0016514|GO:0035060
Cla05g00496 457 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN LFR-LIKE 1 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00496 - - - csv:101219772 837.025
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g587 Blo01g00104 . . Bda08g00263 . . . Bma05g01083 . . Cma06g01352 Cma14g01765 Car06g01173 Car14g01590 Sed02g1360 Cpe08g00299 Cpe03g01480 Bhi01g00742 Tan10g0767 Cmetu06g2266 . Hepe05g1601 . Lcy11g1598 . . . . . . . . . Cone7ag0288 Cone4ag0282 Lsi05g01653 . . Cme06g00557 . . . . Bpe05g00873 . . . . Cmo06g01365 Cmo14g01804 . . . . . . . . . . . . . Cla05g00496 Cam05g0544 Cec05g0555 Cco05g0554 Clacu05g0541 Cmu05g0513 Cre05g0581 . Csa03g01274 Chy06g00527 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008618 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00496 Cla_Chr05 FPKM 22.680185 22.455505 10.22307 9.572252 25.962025 24.626675 25.604456 9.419035 9.491725 8.926175