Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00502 ATGCCAGTACGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAAACCCACTTACAGAACTCTGTTCAAAAACCTCCAAAATCAACCCAAAATGGAAAAGGCCCCCCGAATCTGGAACACCAAAACATCAAATCTCGAAACCCATCTTCTCCTCCGAGTAAAAGCAGGGGCCGGAGAAGGAGCAGAGGCGGCCGGAAATCCGATCAAGGAGAAGTGTTTATGAGGCCCAGTTCTCGACCCTGCACGGTTGCACGTAAACCCGATGAACCGGAGTTTAACGCCGGAGCTCTGGTGGCAAGTACTAATCCAAATGGTGGAAACATTAGTGGGATGCAAATGGGTTTTCGAAATTCAAGCAAGTCTTTGAGTTTTGCTCCAAGGCCTGGATTCGGACAAGTTGGAACGAAGTGTATTGTTAAAGCAAACCATTTCTTTGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCATGGCTGAATTGGTGAGATTATACAGAGAATCTGATCTGGGAAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTTTGGAAAGAGTTTGATATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGAGTATAAAGTAGTTATTAAGTTCGTTGCACGTGCAAATTTACACCATTTGGGTCAGTTTCTGGCGGGTAAGCGTGCTGATGCTCCACAAGAAGCTCTTCAAATACTGGACATTGTATTGAGAGAGCTGTCATCTAAAAGGTACTGTCCTATAGGGAGATCCTTCTTTTCTCCTGATATTAGATCACCTCAGCGGCTCGGTGATGGGCTAGAATCATGGTGTGGTTTTTACCAGAGTATTAGACCTACTCAAATGGGACTGTCTCTGAACATTGATATGGCTTCAGCTGCATTCATTGAGCCTCTCCCTGTCCTTGAGTTTGTTGCTCAGCTTCTAGGGAAAGATGTTTTGTCACGGCCATTATCTGACGCTGATAGAGTAAAGATTAAAAAGGCTCTGAGAGGGGTGAAAGTTGAAGTAACACACCGTGGAAATGTAAGGCGGAAATATCGAGTTTCGGGTTTGACATCACAGCCTACAAGAGAATTAGTATTTCCTGTTGATGACAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAGGAGATGTATGGCTTCACCATTCAACATGCACATCTCCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGCAAATTATTTGCCAATGGAGGTAGTTTTTGATTCTTCACCTGCCTGCAAAATTGTAGGGGGCCAAAGATATACAAAGAGATTGAATGAGAAGCAAATAACTGCACTTCTAAAAGTCACATGTCAAAGACCTAGGGATCGGGAAAATGACATTTTGCAGACTGTCCAACATAATGCTTATGATAATGATCCTTATGCTAAGGAGTTTGGGATTAAAATTAGTGAAAAGCTGGCTTCCGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATATCATGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTGGGTCAATGGAATATGATGAATAAGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGTATCAACTTCTCTAGGAGCGTGCAAGAGAGTGTTGCTCGTGGGTTTTGTTCTGAACTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTTAATCCAGAACCAGTTATTCCAATATACAACGCAAGGCCAGAACAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACTAAAGGGAAAGAGTTAGAACTATTATTGGCTATTTTACCTGACAATAACGGGTCGCTTTACGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAACACGTGTTGAAGATAAGTAAGCAGTACCTTGCTAATGTGTCACTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATTAGCTGCAGGATACCGCTTGTGAGTGACATACCAACAATAATTTTCGGTGCAGATGTGACCCATCCAGAGAACGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTAGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAGTATGCTGGACTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACTGTCAGCGGTGGCATGATCAGGGATCTTCTGGTTTCATTTAGGAAAGCTACAGGGCAGAAGCCTCTCAGGATAATATTTTACAGCACTATTTCCCTTGACAAACCCCAGACCTGTTTAATAGAACTTTCCTTGGAGTTTACAAAACTGTCTGGAAATACGGAAAAATCTAGTTCCTGCTTCCATGTACACAGTATTTGTCAAGTTTACACATTGCTAGCTGTCTCTGATGGTGTTTGCCAATTTTCTTGCCAGGGATGGGAACCGAATTACCAACCACCTGTGACGTTCATTGTCGTGCAAAAGCGACACCACACCCGATTGTTCGCCAACAACTATAGAGATAGAAGTAGCACAGACAAGAGTGGGAACATTTTGCCTGGCACTGTAGTTGACTCCAAAATATGCCACCCAACAGAATTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGGGGACGAGTCGCCCAGCTCACTACCATGTTCTTTGGGATGAAAACAATTTTACTGCAGATGGAATTCAGTCATTAACGAACAATCTTTGCTACACGTATGCAAGGTGTACACGTTCGGTTTCTGTCGTCCCTCCAGCATACTATGCACATTTAGCTGCATTCCGAGCTCGATTCTACATGGAACCGGAGATGCAGGAGAATGGCTCAGCTGGTCGTTCTGCCAAGAGTACACGCACTACCGGAGAGTCTGGGGTTCGTCCTTTGCCAGCTCTAAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 3072 43.33 MPVRQMKESSEQHLVIKTHLQNSVQKPPKSTQNGKGPPNLEHQNIKSRNPSSPPSKSRGRRRSRGGRKSDQGEVFMRPSSRPCTVARKPDEPEFNAGALVASTNPNGGNISGMQMGFRNSSKSLSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWKEFDIKLVDEEDGVSGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEVVFDSSPACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVLKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYSTISLDKPQTCLIELSLEFTKLSGNTEKSSSCFHVHSICQVYTLLAVSDGVCQFSCQGWEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSAKSTRTTGESGVRPLPALKENVKRVMFYC 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4625377 4634055 + ClCG05G004800.2 Cla05g00502 271992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00502 1023 Pfam Argonaute linker 2 domain 481 527 IPR032472 -
Cla05g00502 1023 ProSiteProfiles Piwi domain profile. 629 982 IPR003165 GO:0003676
Cla05g00502 1023 PANTHER PROTEIN ARGONAUTE 10 57 1022 - -
Cla05g00502 1023 SMART DUF1785_2 281 333 IPR014811 -
Cla05g00502 1023 ProSiteProfiles PAZ domain profile. 334 444 IPR003100 GO:0005515
Cla05g00502 1023 CDD PAZ_argonaute_like 333 454 - -
Cla05g00502 1023 SMART PAZ_2_a_3 338 466 IPR003100 GO:0005515
Cla05g00502 1023 MobiDBLite consensus disorder prediction 990 1004 - -
Cla05g00502 1023 MobiDBLite consensus disorder prediction 986 1007 - -
Cla05g00502 1023 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 1022 - -
Cla05g00502 1023 MobiDBLite consensus disorder prediction 15 54 - -
Cla05g00502 1023 Pfam Piwi domain 853 981 IPR003165 GO:0003676
Cla05g00502 1023 Pfam Piwi domain 630 797 IPR003165 GO:0003676
Cla05g00502 1023 Pfam Mid domain of argonaute 538 615 IPR032473 -
Cla05g00502 1023 SUPERFAMILY Ribonuclease H-like 515 985 IPR012337 -
Cla05g00502 1023 Pfam Argonaute linker 1 domain 282 331 IPR014811 -
Cla05g00502 1023 Gene3D - 698 1023 IPR036397 GO:0003676
Cla05g00502 1023 Gene3D - 519 692 - -
Cla05g00502 1023 MobiDBLite consensus disorder prediction 1 90 - -
Cla05g00502 1023 SUPERFAMILY PAZ domain 328 495 IPR036085 GO:0005515
Cla05g00502 1023 CDD Piwi_ago-like 499 981 IPR045246 -
Cla05g00502 1023 Gene3D paz domain 327 459 - -
Cla05g00502 1023 SMART Piwi_a_2 629 982 IPR003165 GO:0003676
Cla05g00502 1023 Pfam N-terminal domain of argonaute 138 272 IPR032474 -
Cla05g00502 1023 Pfam PAZ domain 360 471 IPR003100 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01223 Cla-Chr4:27345092 Cla05g00502 Cla-Chr5:4625377 0 dispersed
Cla05g00502 Cla-Chr5:4625377 Cla05g02417 Cla-Chr5:35676816 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00502 K11593 - csv:101221352 1865.12