Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00510 ATGGTTGTGAAGAAAATCCCAAAGGAGGTAGACAAGAAAAACGACCCCATAAATCATGGGCATTATCGTCTTTTTAGAAGCCGAAGGTTGCAGTTGACGATGGCTGTTCCCGACAAGGATCCAAGAGAGGAAGTGATTCAGGCATGGTATATGGATGATAGTGATGAAGACCAGAGGCTTCCTCATCACCTTGAACCGAAGCAATATTTGTCCCTCCAACAACTTGACGAACTTGGAGTTCTGAGCTGGAGACTAGATGCAGACATTTATGAAACAGATGAGGAATTGAAGAAGATACGTCGTGATCGTAATTACTCCTACATGGACTTCTGTGAGGTCTGTCCAGAAAAGCTTCCTAACTATGAAGAGAAGATTAAAAGCTTTTATGAGGAACACCTTCACACTGATGAGGAGATCCGTTATTGTGTGGCTGGGAGTGGTTATTTTGATGTTAGAGATCTGAATGACAAATGGATCCGTATTTGGGTAAAGAAGGGAGCAATGATTGTCTTGCCTGCTGGAATTTATCATCGCTTTACTCTGGATTCTGACAATTACATCAAGGCCATGCGACTCTTTGTTGGTGATCCTGTCTGGACTCCTCACAACCGTCCCAATGATCATCTTCCCGCCAGGAAGGAGTATCTCAAATGTTTTGTGGAGAAGGAAGCTGGTAATCAGGCCGTTAACGCTGCAGCTTGA 702 43.87 MVVKKIPKEVDKKNDPINHGHYRLFRSRRLQLTMAVPDKDPREEVIQAWYMDDSDEDQRLPHHLEPKQYLSLQQLDELGVLSWRLDADIYETDEELKKIRRDRNYSYMDFCEVCPEKLPNYEEKIKSFYEEHLHTDEEIRYCVAGSGYFDVRDLNDKWIRIWVKKGAMIVLPAGIYHRFTLDSDNYIKAMRLFVGDPVWTPHNRPNDHLPARKEYLKCFVEKEAGNQAVNAAA 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4717207 4720169 - ClCG05G004880.2 Cla05g00510 272000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00510 233 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 1 39 231 - -
Cla05g00510 233 Pfam ARD/ARD' family 47 201 IPR004313 GO:0010309
Cla05g00510 233 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 46 209 IPR027496 GO:0016491|GO:0019509
Cla05g00510 233 CDD cupin_ARD 72 201 IPR004313 GO:0010309
Cla05g00510 233 PANTHER ACIREDUCTONE DIOXYGENASE 39 231 IPR004313 GO:0010309
Cla05g00510 233 SUPERFAMILY RmlC-like cupins 47 219 IPR011051 -
Cla05g00510 233 Gene3D Jelly Rolls 35 221 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00510 K08967 mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] - csv:101222292 402.519
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00510 Cla-Chr5:4717207 Cla06g00613 Cla-Chr6:7426868 2.73E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g555 . . Bda03g00867 . . . . . . . . . Car06g01188 . Sed02g1341 . . Bhi01g00761 Tan10g0792 Cmetu06g0848 Lac12g2248 Hepe05g1585 . Lcy11g1580 . . . . . . . . . Cone7ag0277 . . Csa02g01124 . Cme06g00576 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00510 Cam05g0561 Cec05g0573 Cco05g0571 Clacu05g0558 Cmu05g0529 Cre05g0598 Lsi09g01292 Csa03g01292 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00510 Cla_Chr05 FPKM 42.31773 44.288349 27.93573 26.162775 35.506886 38.855453 37.16885 29.464245 29.21505 30.128809