Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00515 ATGAAAACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCGTCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCCAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCTACGTCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACTATCCCCAATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCACTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCCTACCGGAAAATATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTAGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGATTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAGCAATCTGACCGTCTTCGATGTTAGTGACAACAATCTCGTCGGACCGTTGCCGGAGACGATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACCACCGCCGCCATCTTATTGGTGA 1128 50.8 MKTLSSPLSKSLFLISVLILLSQPSHQATPSPTPFLPNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPYVLTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPSYW 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4779447 4780574 + ClCG05G004925.1 Cla05g00515 272005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00515 375 Gene3D Ribonuclease Inhibitor 43 206 IPR032675 -
Cla05g00515 375 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515
Cla05g00515 375 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 16 371 - -
Cla05g00515 375 Gene3D Ribonuclease Inhibitor 207 334 IPR032675 -
Cla05g00515 375 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Cla05g00515 375 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 371 - -
Cla05g00515 375 SUPERFAMILY L domain-like 44 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01538 Cla-Chr3:31016875 Cla05g00515 Cla-Chr5:4779447 3.57E-105 dispersed
Cla05g00515 Cla-Chr5:4779447 Cla06g01020 Cla-Chr6:21872214 1.14E-147 dispersed
Cla05g00515 Cla-Chr5:4779447 Cla11g00230 Cla-Chr11:2662401 2.39E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00515 - - cmos:111457817 679.863