Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00517 ATGGCAACCTTGATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATTAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTTACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATCGAAGAAGATGCAGACTCATTTGCGAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGCAGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCATTTGACAACCAAATGCCTCCTTTTATGTTTTCTGATGAGTCTTCTGTTTCTGAAGCTGAATCCCACACACCAGAAATCCACCTCCCAAATCATGCACTGCACGACAAAGATGACTTCCACAAGGAGTTGGGGAGTTCATCGTCAACGAACCAACATCCATTAAGAATGGAAGGAGATAATGCTGGGGAATCTAATTCTTGCTCAAGTAAAGGGGGTTTGAAACAGCTCAATGAGATGTTTGCATCAAGAAAAAATGTGCCAGAAAATTTAGAGGTTAGTGAGGGAAGCACTGTATCGCAATTAGTTTTTCATGAAGGTGAATCTGATGACCAAAACTTGCAAAATGTGGAACACCCTCAGTTATCAAGGAAAATTAATGGTCTTAACTCTCAGGTCCTGTGTGAGTCAGAAAGTAATGAAAAATTGGATGCTGAGCTTCAAAATTTAAGAAAAAGACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTTAAATACCAGAATTCTTTGGAGAAGTTATCCAGCCTAGAGAATGAACTTAGTTCTGCTCAAAAGGATGCTAGTGGACTTGACGAAAGAGCGAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATCTGAAAGCAGAGAAGAATGCTAGCCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAATCAATTATCTGTAGCCCAACAAGATGCTGAAGGACAGAATGAGAGAGCTGCTAAGGCAGAAATTGAAGTTCAGAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAGGTCAGTCTTCTTCAGTATGAACAATGCCTAAAGAAGATATCTGCCTTAGAGAACAAAATCTCTCTCTCTGAAGATTATGCAAGAATGCTTGATGAACAAATAAAAAGTTCAGAAACTGAAGTGGAAGCACTGAATAGAGCTCTTGTTGAACTGAATAAAGAGAAGGAAATAGTATCTCGACAATATGAGCAGTGCTTGGAGAAAATTGCGAAGATGGAAACTGAAATATCTTATGCTCAAGCTGATGCCCAACGTCTGAAAGGTGAACTTGTGATGGCCAATGCAAAACTGGAGACAACAGAAGAACGGTGTGCTCATTTGGAGCAGTCGAACCATTCGCTGCAGTTTGAGGCAGACAAACTTGTACAGAAGATTGCTATGAAGGATCAAGAGCTTGCAGAAAAGCAAGATGAGTTGAAGAAACTGCAGAGTCTAATGAACGAGGAGCAGTCCCGATTTGTACAAGTCGAGAACACTCTCCACACTCTGCAGAAGTTACATTGTCAATCGCAGGAGGAGCAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGCATGGAGGAAGACCTTCAACGAGTTAAGGATGAAAACAAAATATTGAATGAACTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGAGGATCAATTATCTGGCTTGAAGGAGATGAAAGAGAAGCTTGAAGAAGTTGTTTCCCAGAAAGAAGAGCAGAGCAGCTTGCTTGAGAAAGAGATCCATCATTTGAGAGAAGAAATTAAGGGTTTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAGGCCGTAGGGTTGGATCCTCACTCCCTTGAATCTTCTGTAAAGGAATTTCAAGAGGAAAATGCCAAGCTGAGGGAGGCCTGTGAAAACGACAGGAACAAGATAGAAGCACTTTATGAAAAACTTAGTTATATGGATGAACTTGCAAAGGAAAATTCAATTCTCAAGGTATCTCTGGCTGAATTGAATGCTGAATTGGAGAGGTTAAGGGAGAAAGTCAAGGAATCCCAGGACCTTTCCCAGTTTACCCAGGGAGAAAAAACTACTCTTGTTGCAGAGAAATCTTCCTTGCTTTCAAAATTGCAGAATGTAACTGAGAATATGTTGAAACTTCTAGAGAAGAACACATTGCTGGAAGACTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGTTTAAGGGCAAAATCAAAGGGCTTGGAAGAATTCTGCCAGTTGCTCAAGGATGAGAGGTCCAATCTTTTGAATGAAAGAGGCGCACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTAGGAAACCTGGAAAGGAGGTTTACGAACCTAGAAGAGAAATGTGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTTGAAGAATTGAGGTTTTCCCTTCTCATGGAAGAACAAGAGCATACAAGTTACAAGCAGTTGACTGAGGCCAGACTTGCTGGTTTGGAGAACAATGTCCATAACCTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAGGTTGAAATCTATATATTGCAGAAGTTTGTTGAGGACTTGGAAGAGAAAAATCTTTCTTTGCTTATTGAATGTGAACAATATGAAGAGGCATCCAAGTTATCAGATAAACTTATTGCTGAATTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCGATAAATTAAGAGCAGGAATCCGTAAGGTATTAATGGCACTTCAAATTGATCAAGATTGTGGGCAGGGAAATATGAAAGAAGAGAGAATTCTGATACTGGATATTTTGGCCAGAATTGAGGATTTGAAAACTTCCGTGTTCAAAAACAAGGACAAGAAGCAGCAATTGCTAGTTCAGAACTCGGTTTTATTAACTCTTTTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGACGAAAAGCCAGTTGATGATGCAAGTTAGCCAGTGGGAGCAGCATGAGCTACTGCTGAAGGCAGAGATTGAAACTCTAAATGAGAAGCTAATAAATCTGCAAGGGGCCTGTCTCATGCTGGAAAAAGAAAATTGTAATGTTGCTGAAGAAAAGAAATCATTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTATTCAACAAGAGCAGCAGAATTTAATCATCCAGGAAGTGATTGCTTTCAACATCCTATCCTCAATTTTTGAAAGCTTCAAAATAGAGAAGTTCTTGGAAATAGAAAATCTTGTTCAAGACATCTCTCATCTCCAAGTGGTTAATTCTGATACAAGGGAAGAAGTTGGAAAGTTGGCACAGAAATTTCAGTTGAAGGAAGTGGAAAATTTGCATTTAAATGGATCAGTACAGAAATTGGTCAAGGACCTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTACTTGGAAACGATTTTCTGAAGATGAAGGCCCAAGAGCTTTCTGAAACAGAAGAGGAACTTAAAAATTCACAAAACTTCAACATGAAATTGTCTGGGGCAGTCGAGGAGCTGAAGATGGAAGGTAAAGAATCAACTATGATCAGACACAGACTACAGAATGGGAATCGTGAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGATATTCAATGCCTCTGTAAAGTAAATGAAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTCGAGAAATGCAAAATTAGAGAGGAGTGTCTGAGTTTAGAGCTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAGGCTGAAGCCACAACATTTTACTTTGATCTTCAAATCTCATCGATACGGGAGGTTTTATACGAACACAAGGTTCATGAACTTGCACAAGCTTGTGAAAATGCTGGGGATGAGAACACTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTAAGTTTCCTGGAAACTGAAATCAGAGAAATGGAGGCACAGTTGTCTGCATATAAGCCCGCCATAGCTTCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGAATTAATCAGAAACAGTATAGTTTTTGTGAACTTGTGTACTTGTCTATCAGATTGCAATTACTTTTTAAGCTTGGCGAGGAAACCACAATTCATGTTCATCACAGGAGCTGTAATGTCCACCACAGAGATGAGATATTGAATTTGCAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAGAAACTCAACAAAGAAGCTGCTGACAAACATGTCAAAGACTTCAAATCAGAAGGAGCCTCACGTCAGAAAGTGACAATGAAGGAAGGGAAAGATTTGAGGGATGAAATTACTGGCAATCAGAAGGCAAGAAAGAATAAACCCGACAATGGAATATTAATGAAGGATATTCCACTGGATCATGTATCAGATAGTTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAAACCAATGATCAAATGCTTAAGTTGTGGGAAACTGCTGAGCAGGATAGCGACCAGAATTTGATTGATGGCTCGCCACCACAAAGCCCGCCAGACCCACAAGTTGAGTACCCGCAGTTGGAAATTGTAGAACATAAGAGTCCAGATTTTTCTTCAGAACTGCAAGCAGAGAAGGAGTTGAGCATTGATAGATTGGACCTATCACCCAGCATTAGAGAACGAATTCGAAGAGGCCGAAAAGGAAAGCTTTTAGAGAGACTTGATTCAGATGTCATTCAGTTGACAGGTCTTCTAACAAGCGTTCAAGATTTGAAAAAGAGAATTGAAGTGAACACCCTTGAAATGGCTAGAAACAATGAATATGACACAGTCGAGAAACATATTAAAGAAGTTGAGGAAGCCATTTTTCAACAAGTAAATATCAATGGTCAACTGAAGCAGAATTTGGAACGCAGTCCCTCATCTTTCGAGCGAAGACCCTCAGTTGAACTCGAGGCAACTGGAAACATCCCCTTAAGCAAACTAACAGAACAGGCACAAAGAGGATCCGAGAAGATAGGAAAACTACAATTCGAGGTACAGAACATTCAGCGGGTTGTGCTGAAACTTGAAGCTGAGAAGAAAAGAAAAGGGAAGAACAGATTCTCCAAGAGTAAACCTGGTGTTATTCTGAGAGACTTCATCTACAGAAGCGGAAAACGCAGCGAAAGACGAAAGAAGGCATGTTCTTGTGGGTGCACAAGACCTACTACTCATGGAGACTGA 5553 39.94 MATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESSVSEAESHTPEIHLPNHALHDKDDFHKELGSSSSTNQHPLRMEGDNAGESNSCSSKGGLKQLNEMFASRKNVPENLEVSEGSTVSQLVFHEGESDDQNLQNVEHPQLSRKINGLNSQVLCESESNEKLDAELQNLRKRLNQMEAEKEAFFLKYQNSLEKLSSLENELSSAQKDASGLDERASKAEIEIKILKEALLDLKAEKNASLLQYNQCLQKISSLENQLSVAQQDAEGQNERAAKAEIEVQNLEQQLSRLAAEKEVSLLQYEQCLKKISALENKISLSEDYARMLDEQIKSSETEVEALNRALVELNKEKEIVSRQYEQCLEKIAKMETEISYAQADAQRLKGELVMANAKLETTEERCAHLEQSNHSLQFEADKLVQKIAMKDQELAEKQDELKKLQSLMNEEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEDLQRVKDENKILNELHFSSNTSMKNLEDQLSGLKEMKEKLEEVVSQKEEQSSLLEKEIHHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEENAKLREACENDRNKIEALYEKLSYMDELAKENSILKVSLAELNAELERLREKVKESQDLSQFTQGEKTTLVAEKSSLLSKLQNVTENMLKLLEKNTLLEDSLSSANKELEGLRAKSKGLEEFCQLLKDERSNLLNERGALVAQLENIELRLGNLERRFTNLEEKCADLENDKDSALHQVEELRFSLLMEEQEHTSYKQLTEARLAGLENNVHNLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNLSLLIECEQYEEASKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALQIDQDCGQGNMKEERILILDILARIEDLKTSVFKNKDKKQQLLVQNSVLLTLFKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKTKSQLMMQVSQWEQHELLLKAEIETLNEKLINLQGACLMLEKENCNVAEEKKSLLKKFLDLEEDKNIIQQEQQNLIIQEVIAFNILSSIFESFKIEKFLEIENLVQDISHLQVVNSDTREEVGKLAQKFQLKEVENLHLNGSVQKLVKDLHEAEDLNDELNYQILLGNDFLKMKAQELSETEEELKNSQNFNMKLSGAVEELKMEGKESTMIRHRLQNGNRELSEKCLSQENDIQCLCKVNENLKSEVDLLNEEVEKCKIREECLSLELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENTAKTMEIEQLRERVSFLETEIREMEAQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGINQKQYSFCELVYLSIRLQLLFKLGEETTIHVHHRSCNVHHRDEILNLQKIGAMIKAVEKAVIKEKEKLNKEAADKHVKDFKSEGASRQKVTMKEGKDLRDEITGNQKARKNKPDNGILMKDIPLDHVSDSSFQRRSKRESSETNDQMLKLWETAEQDSDQNLIDGSPPQSPPDPQVEYPQLEIVEHKSPDFSSELQAEKELSIDRLDLSPSIRERIRRGRKGKLLERLDSDVIQLTGLLTSVQDLKKRIEVNTLEMARNNEYDTVEKHIKEVEEAIFQQVNINGQLKQNLERSPSSFERRPSVELEATGNIPLSKLTEQAQRGSEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNRFSKSKPGVILRDFIYRSGKRSERRKKACSCGCTRPTTHGD 1850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4787015 4794187 - ClCG05G004940.2 Cla05g00517 272007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00517 1850 MobiDBLite consensus disorder prediction 1582 1599 - -
Cla05g00517 1850 Coils Coil 1311 1338 - -
Cla05g00517 1850 MobiDBLite consensus disorder prediction 147 175 - -
Cla05g00517 1850 Coils Coil 1245 1265 - -
Cla05g00517 1850 Coils Coil 326 381 - -
Cla05g00517 1850 Coils Coil 1388 1422 - -
Cla05g00517 1850 Coils Coil 1128 1148 - -
Cla05g00517 1850 Coils Coil 812 853 - -
Cla05g00517 1850 MobiDBLite consensus disorder prediction 140 175 - -
Cla05g00517 1850 Coils Coil 949 969 - -
Cla05g00517 1850 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Cla05g00517 1850 MobiDBLite consensus disorder prediction 1527 1571 - -
Cla05g00517 1850 PANTHER PROTEIN NETWORKED 4A 1 1850 - -
Cla05g00517 1850 Coils Coil 700 741 - -
Cla05g00517 1850 Coils Coil 1037 1071 - -
Cla05g00517 1850 Coils Coil 872 906 - -
Cla05g00517 1850 MobiDBLite consensus disorder prediction 1527 1599 - -
Cla05g00517 1850 Coils Coil 1220 1240 - -
Cla05g00517 1850 Coils Coil 403 535 - -
Cla05g00517 1850 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Cla05g00517 1850 Coils Coil 599 647 - -
Cla05g00517 1850 Coils Coil 571 591 - -
Cla05g00517 1850 SUPERFAMILY Tropomyosin 223 447 - -
Cla05g00517 1850 Coils Coil 669 696 - -
Cla05g00517 1850 Coils Coil 756 790 - -
Cla05g00517 1850 Coils Coil 921 941 - -
Cla05g00517 1850 Coils Coil 235 318 - -
Cla05g00517 1850 Coils Coil 1100 1120 - -
Cla05g00517 1850 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 1850 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00517 - - - csv:101218746 3062.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00005 Cla-Chr3:106401 Cla05g00517 Cla-Chr5:4787015 2.69E-40 dispersed
Cla05g00517 Cla-Chr5:4787015 Cla11g01426 Cla-Chr11:27811714 3.07E-33 dispersed
Cla04g01228 Cla-Chr4:27387638 Cla05g00517 Cla-Chr5:4787015 2.25E-09 transposed
Cla10g00734 Cla-Chr10:11935289 Cla05g00517 Cla-Chr5:4787015 2.83E-37 transposed
Cla05g00517 Cla-Chr5:4787015 Cla07g00040 Cla-Chr7:418123 7.01E-54 wgd
Cla05g00517 Cla-Chr5:4787015 Cla09g00678 Cla-Chr9:6473804 1.44E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00517 Cla_Chr05 FPKM 22.267767 20.764935 11.985246 11.680037 35.971661 37.560379 34.328644 17.211304 18.441374 17.974915