Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00518 ATGGACACTCCGGAGAGGAATCAGATCGGCACTACTTCTGTCTCTAAATTTGAGGATTCCCCAGTTTTCAACTACATCAATAATCTTTCTCCGATCCAACCTGTCAAGTCCATACATACTACACAGACCTTCAACTCTCTTAGTTTTGCTTCCCTTCCTTCGGTTTTTACTTCGCCACATGCCAGTTCTTACAAGGAATCTAGATTCTTAAGAAGGCACATTTATTCAGATCTATCAAAGCCAGACTTCTCTTCCGAAAATGAGAATAAAGTCGGCACTGATGGAGGTAATACAGGGAATGTGGCTCAATTGCAGGATAACTCTAGTGCACCAGATGGCAAATCAGATTCACTTTCCAATCCATCTACTGAACCGCCTTCTGAACATTCCGTGTCTACTAAAGAGGAGCCACAAGCATCAAAGAGTGATTCTTCTCATTCAGATTGTAACCAAAAGCTACCAGATAGTGTTTTAAAATCAGGCGAAGACCCGTCTTTAAGTGACCCCTGTGTTAAAAATAAATCTGAAGATGGATCATCTCAAGCTGAAGGGAATAAGGAGGTCGTTAGCCACACTGAAGAAAGAGAGGGGACGGGTTATGACTGGGAAAGTTTAATTACTGAAGGTGCTGATCTTTTGATATTCAGCTCCCCCAATGGCTCAGAGGCTATCAGACTAGTTCAGAAACCATTAGACCTTGTGACAGGGTTTACATCAAGTACCTTGTCTCAGATCATGGACAATGACAATGCCAATCTGTCAAAGATGAGAATTGCTGATCCAATAGAATCAAGCGGTGGACAGCATGAAATAGAGTTTTTGTCATCTGAAGCTGGAGAGGCTTGTGAAATCAAAGATATGGACCAAGGCGTAGATAACCTTTCCTTTCCAAATTCAAGTAACTCTATTAGTAGGGAAATAACAGATGATGAAGTGGCTAGATATATAGCAGATGATTGTAAGCCGGCATCTAATTTGTATCGGGGTATGCGGAGGCGCTGTCTGGACTTTGAGGCTGCAGTCAGTCGAAGAAAAAACTTAGAAGATGGTTCAAATGGTGGTTCTGTGTTGACACATCCAGAAGAGAAGACGGCATCCATGGATAAACAACTTGTCCCTTATAAATCTGGAGGTGTTGCAACTAGATGCGTTTTAACTGGAATAGGTTTACACTTAAATGCTTTGGCAACAACTTCAAAGGATGCCAAAAATCTCAATCATGAAAAGTTTTCATCTGAGAGGCAACTGAATTTGCCTAATTCAAGTGCTTCATGTCATTCACCTTCAACTGGTCGGGATCCTCTCTTGACATCAGTTGTTACTGAAAGAGACATGGATCCATCAGGGAATGGAATTCAAAATGAGGAAGATGCTGCTAGGGCATCTGCATATGTGCTTGCTGAAGATTTCAATCAAAATAGTCCCAAAAAGAAAAGGCAAGTCAAGCGGAGGTTGGAACATGCTGGAGAAACTGAGTCATCATGCAAACGCTGTAACTGCAAGAAGTCCAAGTGTTTAAAACTTTACTGCGAATGCTTTGCAGCCGGTGTTTACTGTATTGAGCCATGTTCATGTCAAGATTGCTTTAACAAGCCTATTCATGAAGACACCGTTCTTGCAACTCGTAAGCAGATTGAATCTCGCAATCCGCTAGCATTTGCTCCAAAAGTGATCAGAAACTCGGATTCTCTTCCAGAACCTGGGGATGAATCTAACAAAACCCCAGCATCTGCAAGGCATAAAAGAGGATGCAACTGCAAGAAATCAAGTTGCCTCAAGAAGTATTGTGAATGCTATCAGGGTGGTGTTGGATGCTCCATCAGTTGCAGATGTGAGGGGTGTAAAAATGCATTTGGAAGAAAGGATGGGTCCTCTCTATTAGGATTAGATGCTGAACTAGAAGAAGAAGAAGCAGAAACAAACCAAAAGAGTGTGATGGACAAAGGTCTGCAAGGCCCGGAAATCCAGAATAATGAAGAGCAGAACCCAGGTTCTGCTATTCCCTCAACTCCATTACAACTTTCCAGACAATTGGTTTCCCTGCCGTTTTCTTCAAGAAGCAAGCCGCTGCGTTCTTCTTTTCTAAATGTTGGATCCTCATCTGGATTTTATGCTGCCCACAAGCTTGAAAAGCCGAATATCCTCAGAGCCCAACCGGATCTTGGGAAAAATACCAAGCCTGTTTCGGAAGATGAAATGCCAGATATTCTTCGTGGTGATTGCTCTCCTGGTGCAGGTGTGAAGACTGGTTCCCCCAACAGCAAGAGGATATCTCCTCCTCAGAGCGACTTTGGCTTATCGCCACTGCCACGAACGGGTCGGAAATTGATATTGCAGTCGATTCCATCTTTCCCTTCTCTCACCCCTCAACACTGA 2376 43.01 MDTPERNQIGTTSVSKFEDSPVFNYINNLSPIQPVKSIHTTQTFNSLSFASLPSVFTSPHASSYKESRFLRRHIYSDLSKPDFSSENENKVGTDGGNTGNVAQLQDNSSAPDGKSDSLSNPSTEPPSEHSVSTKEEPQASKSDSSHSDCNQKLPDSVLKSGEDPSLSDPCVKNKSEDGSSQAEGNKEVVSHTEEREGTGYDWESLITEGADLLIFSSPNGSEAIRLVQKPLDLVTGFTSSTLSQIMDNDNANLSKMRIADPIESSGGQHEIEFLSSEAGEACEIKDMDQGVDNLSFPNSSNSISREITDDEVARYIADDCKPASNLYRGMRRRCLDFEAAVSRRKNLEDGSNGGSVLTHPEEKTASMDKQLVPYKSGGVATRCVLTGIGLHLNALATTSKDAKNLNHEKFSSERQLNLPNSSASCHSPSTGRDPLLTSVVTERDMDPSGNGIQNEEDAARASAYVLAEDFNQNSPKKKRQVKRRLEHAGETESSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSLPEPGDESNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSSLLGLDAELEEEEAETNQKSVMDKGLQGPEIQNNEEQNPGSAIPSTPLQLSRQLVSLPFSSRSKPLRSSFLNVGSSSGFYAAHKLEKPNILRAQPDLGKNTKPVSEDEMPDILRGDCSPGAGVKTGSPNSKRISPPQSDFGLSPLPRTGRKLILQSIPSFPSLTPQH 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4802217 4807050 - ClCG05G004950.2 Cla05g00518 272008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00518 791 MobiDBLite consensus disorder prediction 80 128 - -
Cla05g00518 791 MobiDBLite consensus disorder prediction 172 186 - -
Cla05g00518 791 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 791 IPR044522 GO:0003700
Cla05g00518 791 SMART CXC_2 493 534 IPR033467 -
Cla05g00518 791 SMART CXC_2 579 620 IPR033467 -
Cla05g00518 791 MobiDBLite consensus disorder prediction 408 433 - -
Cla05g00518 791 MobiDBLite consensus disorder prediction 411 433 - -
Cla05g00518 791 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 791 - -
Cla05g00518 791 MobiDBLite consensus disorder prediction 79 199 - -
Cla05g00518 791 MobiDBLite consensus disorder prediction 747 761 - -
Cla05g00518 791 ProSiteProfiles CRC domain profile. 494 619 IPR005172 -
Cla05g00518 791 MobiDBLite consensus disorder prediction 556 583 - -
Cla05g00518 791 MobiDBLite consensus disorder prediction 718 771 - -
Cla05g00518 791 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 582 617 IPR005172 -
Cla05g00518 791 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 496 531 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00518 - - - csv:101203694 1418.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00518 Cla-Chr5:4802217 Cla08g01314 Cla-Chr8:26049978 6.91E-44 dispersed
Cla05g00518 Cla-Chr5:4802217 Cla06g00599 Cla-Chr6:7267377 1.39E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61017 PF03638 TCR 2.00E-11 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00518 Cla_Chr05 FPKM 10.105491 10.169763 11.926266 13.138039 1.185939 0.594824 0.641574 0.0 0.0 0.2392