Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00519 ATGACGGTAAAAAAGAAGGAGGAATCTTGGCTCATCCATCCGTTGGATACGTGCGTACAGTCAACATTTACGGTCTTCTTCTTTCTGGCGAGGGCTCCTTTTAGGGTCTGCGGGTCCGATTATGCTGAGAGGATTATCTATGATAATGGGAATTTTGACAGACAACAACATTCTGTACAGTTCTTACTTTACCGGGCTGCAATCTTCACCCTGTTTGATCTCTCAGCAATGAATTCGAAAGGCAATGATATGGGGGGTTCTCCGGTCCCAAAGGAGACACAGAGCCAGGATAGAACTCTGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATATGATTGATTTGAAAACTCTAGATATGCAGCTAGAGAAGCACTTGAGCCGTGTCTGGTCAAAGAGCATTGAGAATCAAAGGCCTAAGGATGTGTGGGAGATTGATTTGTCTAAACTTGAGATCATAAGGCTGGTTGCTCAAGGGACTTATGGAACAGTATACCGGGGTACATATGACAATCAAGATGTTGCAGTGAAGGTATTGGACTGGGGGGAGGAGGGTCTAGCCACAACGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGATCATCCTAATGTTACAAAATTTGTCGGAGCTTCAATGGGAGCAACAAATCTTAAAATTCCAATGGATGAACAAAATTCGTTTCCATCTAGGGCCTGTTGCGTTGTTGTTGAGTTTGTTCCTGGTGGGACATTAAAACAATACTTGATTAGATTCTGTAGAAGGAAACTTAGCTTTAGGGAAGTGATTAAATTAGCTTTGGAACTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGACAAGCGACTACGCTGTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGCCCAAATTCAATTTACCCGCTATATCTGGATTTGCTTTCTTTTTGGTGGCTTGTTCTTTAACAGCTGTATAGTTGACGTTAACATGCCAATATTCTACCACGCTTACAGGTTCTTCAAGGGAAGCCATACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCCGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGGTATGGTTCTTTGGACCTAAGGCATAAAACATGTCCTTTAAGTCTCTTGTTCATTGCCATTATTCCTTATAATCTGCGACCCAGTATCCCGAGATGCTGTCCAAGTTCTCTGGCAAATGTGATGAAGAAATGCTGGGATGCGAATCCAGCCAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAGAGGAGGGGGGATGATTTCTCCTGATGACACTAGCTGTTTATGTTTCAGGCCTTTCGGCAAGAATTTGGTGGTGGTCTGA 1575 43.62 MTVKKKEESWLIHPLDTCVQSTFTVFFFLARAPFRVCGSDYAERIIYDNGNFDRQQHSVQFLLYRAAIFTLFDLSAMNSKGNDMGGSPVPKETQSQDRTLNSKVAGMGSISSKDMIFRADMIDLKTLDMQLEKHLSRVWSKSIENQRPKDVWEIDLSKLEIIRLVAQGTYGTVYRGTYDNQDVAVKVLDWGEEGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPMDEQNSFPSRACCVVVEFVPGGTLKQYLIRFCRRKLSFREVIKLALELSRGLSYLHSKKIVHRDVKTENMLMTSDYAVKIADFGVARVEAQNPRDMTGETGTLGYMAPEAQIQFTRYIWICFLFGGLFFNSCIVDVNMPIFYHAYRFFKGSHTIEDVMSIALASACGKFTAVICHTPILVLLTCHLQLFDRYGSLDLRHKTCPLSLLFIAIIPYNLRPSIPRCCPSSLANVMKKCWDANPAKRPEMHEVVKMLEAIDTSRGGGMISPDDTSCLCFRPFGKNLVVV 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4824442 4829617 + ClCG05G004970.2 Cla05g00519 272009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00519 524 Gene3D Transferase(Phosphotransferase) domain 1 417 501 - -
Cla05g00519 524 SUPERFAMILY Protein kinase-like (PK-like) 142 494 IPR011009 -
Cla05g00519 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Cla05g00519 524 ProSiteProfiles Protein kinase domain profile. 159 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00519 524 Pfam Protein kinase domain 161 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00519 524 SMART serkin_6 159 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00519 524 Gene3D Phosphorylase Kinase; domain 1 149 242 - -
Cla05g00519 524 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 80 349 - -
Cla05g00519 524 Pfam Protein tyrosine and serine/threonine kinase 453 492 IPR001245 GO:0004672|GO:0006468
Cla05g00519 524 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 448 512 - -
Cla05g00519 524 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 80 349 - -
Cla05g00519 524 Gene3D Transferase(Phosphotransferase) domain 1 243 358 - -
Cla05g00519 524 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 448 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00519 Cla-Chr5:4824442 Cla10g01357 Cla-Chr10:28613891 1.82E-133 dispersed
Cla05g00519 Cla-Chr5:4824442 Cla09g00676 Cla-Chr9:6423803 4.72E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80541 PF00069 Pkinase 1.60E-33 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00519 - - csv:101218975 538.88