Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00520 ATGGCGGCAAAGCTTCATCCAACCATCTCCATCGCGCCAAATTTCATCACACCCACCACTCAGAATGACTCAAAGCATACCCCTACCCTCCATTTTCAAATTGGGTTGTTCAAAAATTGCAAAACCATGGATGAACTTGGACAATTACACTGTTACGCGTTAAAGCAGGGTCTCATTCGCAAACGACCGACTTTAACTAAGCTTATTTCCATTTGCGTGGAAATGGGCACTTCAGAAAGCTTGGATTATGCTCGAAAGGCCTTCGAGCTCTTCCATGAAGACGGGGAAGCAAATGCCACTCTTTTCATGTACAATTCGTTAATCAGGGGATACTCTGCTGCAGGGCTTTGCGATGAAGCTATTTCGCTGTATGTTCAGATGATCGAGGTTGGGTTTATGCCAGACAACTTCACGTTTCCATTTTTGTTAAGTGCGTGTGCTAAGACTGGAGCGTTTGTAGAAGGGGTTCAGCTCCATGGAGCTCTTATGAAGATTGGTTTAGAGAGAGATATGTTTGTTGCTAATTCTCTGATACATTTGTATGCGGAAGGGGAAGAATTTTTGTTTGCTCGAAAGGTGTTTGATGAAATGCTTGAGAGAAATGTTGTTTCATGGACCAGCTTGATTTGTGGCTATGCTAGGACAGATGCTTCTAGTGAGGCTGTGGCTTTGTTTTTCCAAATGATCGAGGCAGGTGTTAGACCCAATTCTGTCACAATGGTGTGTGTGATATCGGCTTGTGCCAAGTTGAAAGTTCTTGAACTAGCCAAGAGAATTCATGCTTACATTGAAGAATCAGAAATGGAGATTAATACTCATATGGTGAATGCACTTGTGGATATGTACATGAAATGTGGAGAAACTGGTGCTGCAAAGCGACTATATGATGGATGTGTTGATAAGAATTTGGTTTTGTGTAACACAATCATGTCAAATTTTGCACGCCATGGTATGGCGAAGGAGGTACTTGCTGTCTTAGCAGATATGTTCAGAGTAGATCTTCAACCGGATAGAGTTTCGTTGTTATCAGCAATCTCGGCATGTGGGCAGATGAGTGACTATCTACTTGGGATGTGCTGCCACAATTATTGTCTAAGAAATGGGTATGAAGGTTGGGATAACATTTGCAATGCAATTATTGACATGTACATGAAGTGTGGAAGACAAGAAATGGCCTACAGAGTTTTTGACAGCATGTCAAATAAGACCATTGTGTCGTGGAACTCATTACTTGTTGGTTACATTAGAAACAAAGATTTTGAGCCAGCTAGGAAGATATTCAATGAGATGCCTGTAAAGGATATAGTGTCTTGGAACACAATGGTTAATGCTTTGGTTCAAGAGAGTATGTTTGGTGAAGCAATTGAACTTTTTCGAGAAATGCAATTGAAGGAAATGAAAGCAGATAGGGTGACAATGGTAGAAGTTGCATCAGCATGTGGATATCTCGGAGCTCTGGAACTTGCCAAGTGGGTATATGCCTATATTGTAAAGAACAACATCTACTGTGATATGTTGCTTGAGACAGCATTAGTTGATATGTTTGCTAGGTGCGGTGACCCTCATAATGCGATGGAAGTGTTCAACAATATGGATAGAAAAGATGTATTGGCATGGACAGCAGCCATTGGAGCAATGGCTGTGGATGGGAATGGCAAACGAGCTTTTGAACTTTACAATGAGATGCTAAGGCAAGGGGTGAAACCAGATCAAGTAGTTTTTGTAAACATATTAACAGCTTGCAGCCATGGTGGTTTCGTGGAACAAGGGCAGTACATATTTGAGTCAATGAAGGAACATGGAATCTCTCCACAGATTGTTCATTATGGTTGCATGGTTGATCTATTAGGTCGTGCAGGTAAGTTGGAAGAAGCTCTAGATATTATAAAGAGCATGCCAATGAAACCCAATGGGATTATATGGGGATCTCTATTGGCTGCATGTCGTACCCATAAAAACATCGATATGGCAACATTTGCAGCTGAAAGGTTAGCAGAAGTGGCCCCAGAAAGGACTGGGATTCACGTGCTTCTATCAAACATATATGCTTCAGCTGAAAAGTGGGCTGATGTTGCTAATGTGAGGCTACAGTTGAAGGAAAAAGGAGTTCAGAAAATGCCTGGTTCGAGCTCGATAGAAGTTGATGGAGTTATTCATGAGTTTACCTCAGGTGACAGATCACACCCAGAAAACTGTGGCATTGACATGATGTTAAAGGAAATTACCAACAGGCTTGGGGATGTTGGTTATGTTCCTGATGTAACCAATGTTCTTCTTGACGTAAATGAGCAGGAGAAACAATATCTACTCAATCGGCATAGTGAGAAGCTGGCAATGGCTTACGGGCTTATAAGCACAGAAAAGCATTTACCAATTCGTGTTATAAAGAATCTCCGAATGTGCTCAGACTGTCATGCATTCGCCAAATACATTTCAAAAGTGTATGTTAGGGAAATAACAGTACGAGATAATAACAGGTTTCACTTCTTTCGACAAGGGTCTTGTTCATGTGGTGATTATTGGTAA 2526 41.37 MAAKLHPTISIAPNFITPTTQNDSKHTPTLHFQIGLFKNCKTMDELGQLHCYALKQGLIRKRPTLTKLISICVEMGTSESLDYARKAFELFHEDGEANATLFMYNSLIRGYSAAGLCDEAISLYVQMIEVGFMPDNFTFPFLLSACAKTGAFVEGVQLHGALMKIGLERDMFVANSLIHLYAEGEEFLFARKVFDEMLERNVVSWTSLICGYARTDASSEAVALFFQMIEAGVRPNSVTMVCVISACAKLKVLELAKRIHAYIEESEMEINTHMVNALVDMYMKCGETGAAKRLYDGCVDKNLVLCNTIMSNFARHGMAKEVLAVLADMFRVDLQPDRVSLLSAISACGQMSDYLLGMCCHNYCLRNGYEGWDNICNAIIDMYMKCGRQEMAYRVFDSMSNKTIVSWNSLLVGYIRNKDFEPARKIFNEMPVKDIVSWNTMVNALVQESMFGEAIELFREMQLKEMKADRVTMVEVASACGYLGALELAKWVYAYIVKNNIYCDMLLETALVDMFARCGDPHNAMEVFNNMDRKDVLAWTAAIGAMAVDGNGKRAFELYNEMLRQGVKPDQVVFVNILTACSHGGFVEQGQYIFESMKEHGISPQIVHYGCMVDLLGRAGKLEEALDIIKSMPMKPNGIIWGSLLAACRTHKNIDMATFAAERLAEVAPERTGIHVLLSNIYASAEKWADVANVRLQLKEKGVQKMPGSSSIEVDGVIHEFTSGDRSHPENCGIDMMLKEITNRLGDVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDCHAFAKYISKVYVREITVRDNNRFHFFRQGSCSCGDYW 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4830500 4833025 + ClCG05G004980.2 Cla05g00520 272010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00520 841 Pfam Pentatricopeptide repeat domain 558 617 IPR002885 -
Cla05g00520 841 Pfam PPR repeat 376 401 IPR002885 -
Cla05g00520 841 Pfam PPR repeat 304 331 IPR002885 -
Cla05g00520 841 Pfam PPR repeat 509 535 IPR002885 -
Cla05g00520 841 Gene3D Tetratricopeptide repeat domain 508 724 IPR011990 GO:0005515
Cla05g00520 841 Gene3D Tetratricopeptide repeat domain 362 507 IPR011990 GO:0005515
Cla05g00520 841 Gene3D Tetratricopeptide repeat domain 253 359 IPR011990 GO:0005515
Cla05g00520 841 Gene3D Tetratricopeptide repeat domain 160 252 IPR011990 GO:0005515
Cla05g00520 841 Pfam E motif 651 713 IPR046848 -
Cla05g00520 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Cla05g00520 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cla05g00520 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Cla05g00520 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 433 IPR002885 -
Cla05g00520 841 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 327 815 - -
Cla05g00520 841 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 60 233 - -
Cla05g00520 841 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 231 333 - -
Cla05g00520 841 Pfam PPR repeat family 200 249 IPR002885 -
Cla05g00520 841 Pfam PPR repeat family 433 473 IPR002885 -
Cla05g00520 841 Pfam PPR repeat family 102 148 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 405 436 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 538 570 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 175 203 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 608 632 IPR002885 -
Cla05g00520 841 TIGRFAM PPR: pentatricopeptide repeat domain 103 135 IPR002885 -
Cla05g00520 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Cla05g00520 841 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 60 233 - -
Cla05g00520 841 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 231 333 - -
Cla05g00520 841 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 327 815 - -
Cla05g00520 841 Pfam DYW family of nucleic acid deaminases 749 841 IPR032867 GO:0008270
Cla05g00520 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Cla05g00520 841 Gene3D Tetratricopeptide repeat domain 20 159 IPR011990 GO:0005515
Cla05g00520 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00520 - - - csv:105434834 1528.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00520 Cla-Chr5:4830500 Cla05g01149 Cla-Chr5:12242594 0 dispersed
Cla11g00395 Cla-Chr11:4423619 Cla05g00520 Cla-Chr5:4830500 2.65E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g536 . . . . . . . . . . Cma06g01391 . Car06g01200 . . . . Bhi01g00780 . . . . . . . . . . . . . . . . Cone4ag0258 . . . Cme06g00589 . . . . . Bpe13g00595 . . . Cmo06g01396 . . . . . . . . . . . . . . Cla05g00520 . . . . . . . . Chy06g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013750 0 1 0 0 1 1 2 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 1 1 0 1 1 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00520 Cla_Chr05 FPKM 3.219867 2.860612 4.684381 5.651318 4.514135 4.007255 4.755684 7.794318 7.441016 7.536687