Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00522 ATGTCTCCGTTTCGCCGCCAAAGCTGCTGGAGATGGGCGGCATCCCCACTCATCAAACCCCCCCTCCGAATTTCCCTGGCTAAACCCTCTCGCCTCCACCGAACACACACATATAATCTGTTCTTAATTAAGCCGGAGTTGTTCAAAATGGCATTACAATCACAAATTCGCATCATTTTTTCCTTGCGGAGCTCGATTCGTATCTCTTACTCAGCCAAACCTCTCTGCACCATTACTGGATCGACCCAGGTCTCCGAATCCCCCGACCTTCCGGACTGGGTAAAGTTCTTCGATACTAAAAGCTCTTCACATTCAGAATCTGAAGACGATGTCTTTGCTATTCCTCCATTGGTGCATTGGCTCGAATCTCAAAGGCTCCTAGACAACAGTAAAGTTATCAAGCACAAACTCGGCGAGACGAGCGCTAACGAAGTGGACAAAATAAGCATGATGCTAAAGAATAGATACCCATCACCGGAAAACGTTGCAGAAGCTTTGAATGGAAAGGCTTACAGAGTTTCCAACACTTTGGTCGCACAGCTGCTGAAGAGATTTGGGAATGCTTGGATCCCAGCTTATGGGATTTTCAAGTGGGCGAAAGATCAAACACCTTATCGGCATTCACCTGAATCTTACAACTCCATGGTTGATATCTTGGGTAAGGCTAAAAAGTTTAGACTGATGTGGGAGTTAGTGGATGAGATGAATCATTTATCTGGGTATGTGAGTTTGGAGACCATGAGTAAGGTTATAAGGAGGCTTGCGAGGGCTGGTAGGTATCAGGAGGCAATTGAGGCATTCCGGAAGATAGAGAAATATGGGATTAGTACAGACACAGCAGCCATGAATGTGCTGATGGATGCATTAGTCAAGGAGGGCAGTGTTGAAGAAGCTCGCAATGTGTTTGAAGAATTCAAGGGTTCAATACCTTTCAATTTGACCTCTTTCAATGTTCTAATACATGGTTACTGCAAAGCTAGGAAGGTAAATGAGGCATGGAAGATTATGGAGGAACTCGAGAAAAATGGACTTGAACCTGATGTGATTTCCTACACTGCTTTCATTGAAGCTCATTGCCGCGACAAGGACTTCTGGAAGGTGGATAAGATTCTGATGCAAATGGAACAAAAGGGGTGCAGGCCTAATGCAGTAACTTTCACCATTATAATGCATGCTCTAGGGAAGGCAAAACAGATTAATGAAGCTCTAAAAGTATATGAGAAGATGAAGAAAGAGGGTTGTGTGCCTGATAGTCCATTCTATAGCTCCCTGATATTCATTCTTGGTAAAGCTGGTAGGCTCACAGATGTTCAGGAGATAGTAGAGGACATGACAAAGCAGGGGGTCAATCCAGATGTGTTGACATATAACACGATGATATCTTGTGCTTGTGCGCATTCACAAGAAGAGATAGCACTAAGATGGCTACGGAAAATGGAGGAGGTTTCGTGCAAGCCAGACCTCGAGACTTACCACCCTTTATTGAAGATGTTCTGTAAAAAGAAGAGAATGAAGGTGCTGCAGTTTTTGTTAGATCATATGTTCAAGAATGATGTAAGTATTGAAGCTGGGGCTTACTCGATTCTGGTGCGTGGGATGTGCAAGAACGGGAAACTCCATCTTGCTTGCTCATTCTTTGGGGAAATGGTGTCGAAGGGGATGGTTCCTAAAGACTCCACATTTACGATGTTGAAGGAAGAGCTTGAGAGGAAAAGTATGTTAGAAGAAGTGAAAATCATTGAGAAGTTGATGTCCTATGCAACAACTCAAGATACGAGTTAA 1782 43.83 MSPFRRQSCWRWAASPLIKPPLRISLAKPSRLHRTHTYNLFLIKPELFKMALQSQIRIIFSLRSSIRISYSAKPLCTITGSTQVSESPDLPDWVKFFDTKSSSHSESEDDVFAIPPLVHWLESQRLLDNSKVIKHKLGETSANEVDKISMMLKNRYPSPENVAEALNGKAYRVSNTLVAQLLKRFGNAWIPAYGIFKWAKDQTPYRHSPESYNSMVDILGKAKKFRLMWELVDEMNHLSGYVSLETMSKVIRRLARAGRYQEAIEAFRKIEKYGISTDTAAMNVLMDALVKEGSVEEARNVFEEFKGSIPFNLTSFNVLIHGYCKARKVNEAWKIMEELEKNGLEPDVISYTAFIEAHCRDKDFWKVDKILMQMEQKGCRPNAVTFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSPFYSSLIFILGKAGRLTDVQEIVEDMTKQGVNPDVLTYNTMISCACAHSQEEIALRWLRKMEEVSCKPDLETYHPLLKMFCKKKRMKVLQFLLDHMFKNDVSIEAGAYSILVRGMCKNGKLHLACSFFGEMVSKGMVPKDSTFTMLKEELERKSMLEEVKIIEKLMSYATTQDTS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4836136 4837917 + ClCG05G004995.1 Cla05g00522 272012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00522 593 Pfam PPR repeat 282 306 IPR002885 -
Cla05g00522 593 Pfam PPR repeat 211 235 IPR002885 -
Cla05g00522 593 Pfam PPR repeat 248 275 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 248 278 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 526 556 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 349 383 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 315 348 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 384 418 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 283 306 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 455 487 IPR002885 -
Cla05g00522 593 TIGRFAM PPR: pentatricopeptide repeat domain 211 237 IPR002885 -
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Cla05g00522 593 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 79 589 - -
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Cla05g00522 593 Gene3D Tetratricopeptide repeat domain 470 591 IPR011990 GO:0005515
Cla05g00522 593 Gene3D Tetratricopeptide repeat domain 374 469 IPR011990 GO:0005515
Cla05g00522 593 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 79 589 - -
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Cla05g00522 593 Pfam PPR repeat family 314 360 IPR002885 -
Cla05g00522 593 Pfam PPR repeat family 384 425 IPR002885 -
Cla05g00522 593 Gene3D Tetratricopeptide repeat domain 309 373 IPR011990 GO:0005515
Cla05g00522 593 Gene3D Tetratricopeptide repeat domain 145 308 IPR011990 GO:0005515
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 308 IPR002885 -
Cla05g00522 593 SUPERFAMILY TPR-like 189 412 IPR011990 GO:0005515
Cla05g00522 593 Pfam Pentacotripeptide-repeat region of PRORP 434 566 IPR033443 -
Cla05g00522 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00522 - - - csv:101223103 914.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00522 Cla-Chr5:4836136 Cla05g02634 Cla-Chr5:37544946 1.01E-99 dispersed
Cla05g00522 Cla-Chr5:4836136 Cla08g00621 Cla-Chr8:18186900 8.46E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00522 Cla_Chr05 FPKM 26.224455 25.170473 41.178459 41.370018 33.098156 33.059132 32.440392 59.649494 64.739502 61.962032