Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00523 ATGTCGTCGATGCATTTCTGCCGCACGCTTTTCTCTCCGGGGGGTTTCTCTGCTCTTCCCGGCTTTGTGGGGGCAGTAAACCAGGATTTCCAATTCAGGTTTGGACCATGTTGTAGGCTGTACAGCATCTACAGCAGTAAATTTGACTTTACCGACTTGACACGTCCCCATTCATGGTATCCACATGCACGAAGGAAACGTCGCAAAATTGTTCTGCACATGGGTCCAACAAATAGTGGAAAAACTCACAATGCTTTGAAGAGACTTGAATCAAGTGATTCTGGCTTATATTGTGGTCCCCTGAGATTATTAGCCTGGGAAGTCGCAAAGCGATTGAATAAGGCTAAAATTCCCTGTGATCTGATCACGGGACAAGAAAGAGAGGAAGTTGATGGTGCAAAACATAAGGCCATGACTGTTGAGATGGCCGATGTAACCTCCAGCTACAGTTGTGCTGTCATTGACGAAATTCAGATGTTGGGCTGTAAGACAAGAGGTTATTCATTTACACGTGCACTACTTGGACTTTGTGCTGATGAGGTTCATCTTTGTGGAGATGCGGCTGTTGTACCCCTTATTCAGGAAATTCTTAAAGTAACTGGTGATGACATTGAGGTGCAATACTATGAGAGACTTTCACCTCTGATTCCAATGAATGTTCCACTTGGACCCTATTCTAATATTAGGAAGGGTGATTGCATTGTCACCTTTTCACGTCGTAAAATATATGGTTATAAGAAAGAAATTGAAAGCAAGGGTGGACATCTTTGCTCTGTAGTTTATGGTTCACTACCACCAGAAACTCGAACGCGGCAGGCAACGATGTTCAATGATACAACCAGTGAGTTTGATGTGCTGGTGGCTAGCGATGCCATTGGGATGGGTCTTAATTTGAACATCTCAAGGATCATATTTTCAACTATGGAGAAATTTGATGGTTTTGAGATGCGGGAGCTTACTGTACCAGAGATCAAACAGATTGCAGGTAGAGCGGGCAGGTACGGATCCAAATTTCCCATTGGTGAAGTAACTTGTTTAAATGAAGATGATTTACCCTTTCTTCATTCATCGCTTAAGTCTGATTCTCCCACTATAGAGAGAGCTGGGCTATTTCCAACTTTTGAACTCATATATTTATATTCCCGTCTGCACCCTGAAAATGGCCTGCGGCAGATACTGGAGCACTTCGTTGATAATGCTAAATTATCTGAAAATTATTTCATTGCTGACTGTGAAGGAATGTTGAAAGTTGCTGCCGTCATTGATGAGATGCCTCTCAGTTTGCATGATAAGTACCTTTTCTGCATCAGCCCTGTAGACATGGCTGATGACATTACATCCCAAGGTCTTACACAGTTTGCTCAAAATTATGCGAATAAAGGCATTGTTCGGCTACGAGAAATATTCACAGCAGGGACGCTTCAAGTGCCGGAAACACAAGCTGCACTGAAGGAGCTGGAATCCATTCACAAGGTGTTGGATCTCTATGTTTGGCTGAGTTTCCGACTGGAGGAATCATTCCCGGACCGCGAACTGGCAGTTTCACAGAAGTCAGCCTGCAGCATGTTAATTGAGGGGTTTTTGGGAAGATTTGGATGGCAAAGACCAAAAACAAGGCTGAAGTCGAATATCCGCTCAAGGTCCCTCCTACCAGAGTGTTAA 1662 43.74 MSSMHFCRTLFSPGGFSALPGFVGAVNQDFQFRFGPCCRLYSIYSSKFDFTDLTRPHSWYPHARRKRRKIVLHMGPTNSGKTHNALKRLESSDSGLYCGPLRLLAWEVAKRLNKAKIPCDLITGQEREEVDGAKHKAMTVEMADVTSSYSCAVIDEIQMLGCKTRGYSFTRALLGLCADEVHLCGDAAVVPLIQEILKVTGDDIEVQYYERLSPLIPMNVPLGPYSNIRKGDCIVTFSRRKIYGYKKEIESKGGHLCSVVYGSLPPETRTRQATMFNDTTSEFDVLVASDAIGMGLNLNISRIIFSTMEKFDGFEMRELTVPEIKQIAGRAGRYGSKFPIGEVTCLNEDDLPFLHSSLKSDSPTIERAGLFPTFELIYLYSRLHPENGLRQILEHFVDNAKLSENYFIADCEGMLKVAAVIDEMPLSLHDKYLFCISPVDMADDITSQGLTQFAQNYANKGIVRLREIFTAGTLQVPETQAALKELESIHKVLDLYVWLSFRLEESFPDRELAVSQKSACSMLIEGFLGRFGWQRPKTRLKSNIRSRSLLPEC 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4838582 4847926 - ClCG05G005000.2 Cla05g00523 272013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00523 553 SMART helicmild6 247 335 IPR001650 -
Cla05g00523 553 Gene3D - 50 435 - -
Cla05g00523 553 Gene3D - 211 362 IPR027417 -
Cla05g00523 553 Pfam Helicase conserved C-terminal domain 232 335 IPR001650 -
Cla05g00523 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 337 IPR027417 -
Cla05g00523 553 Gene3D - 56 210 IPR027417 -
Cla05g00523 553 CDD SF2_C_suv3 213 347 - -
Cla05g00523 553 Pfam Suv3 C-terminal domain 1 417 458 IPR041082 -
Cla05g00523 553 Gene3D - 437 545 - -
Cla05g00523 553 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 483 528 IPR022192 GO:0016817
Cla05g00523 553 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 47 542 - -
Cla05g00523 553 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 204 378 IPR001650 -
Cla05g00523 553 CDD DEXQc_Suv3 68 209 IPR044774 GO:0003724|GO:0005524
Cla05g00523 553 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 47 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00523 K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] - csv:101204337 982.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00523 Cla-Chr5:4838582 Cla06g00997 Cla-Chr6:20659664 1.32E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00523 Cla_Chr05 FPKM 0.333333 0.0 0.976391 0.0 11.898344 11.65587 13.841251 1.796865 2.030699 1.646221