Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00531 ATGGCAATTACTCTCCGCCCATTACATCTCACCGACATCGACGATTTCATGAGTTGGGCAGCGGACGAGAAAGCCGCTCGATTCTGCTCCTGGGAGCCTTACCAGGACAAATCGGAAGCCATTGAGTTCATCAACAACCAAGTCCTATCGCACCTCTGGTACCGGGCCATCTGCGTCGACGACCGGCCGGTCGGCGCGATTTCGGTGATGCCGAATACGGCGGCGAGAGATCGGTGCAGGGGAGAGCTAGGGTACGTTTTGGGATCCAAATTTTGGGGGAAAGGGATCGGTACGGCGGCGGTGAAATTGGTGGCGGAGAGGATTTTTGTGGAGTGGCCGGAATTGGAGAGGCTGGAGGCGTTGGTGGATGTGGAGAATTTGGCGTCTCAGAGAGTGCTGGAGAAGGCTGGATTTCAGAGAGAAGGCGTTCTGAGGAAATATGGAGTGTTGAAAGGGAAAACTAGGGATTATGTTATGTTTAGTTTTCTCTCTACTGATCTTCAATCCTGA 510 52.94 MAITLRPLHLTDIDDFMSWAADEKAARFCSWEPYQDKSEAIEFINNQVLSHLWYRAICVDDRPVGAISVMPNTAARDRCRGELGYVLGSKFWGKGIGTAAVKLVAERIFVEWPELERLEALVDVENLASQRVLEKAGFQREGVLRKYGVLKGKTRDYVMFSFLSTDLQS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4901032 4901541 - ClCG05G005073.1 Cla05g00531 272021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00531 169 Pfam Acetyltransferase (GNAT) domain 3 139 IPR000182 GO:0016407
Cla05g00531 169 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 3 156 IPR000182 GO:0016407
Cla05g00531 169 Gene3D - 2 169 - -
Cla05g00531 169 CDD NAT_SF 56 107 - -
Cla05g00531 169 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 163 IPR016181 -
Cla05g00531 169 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
Cla05g00531 169 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00531 - - - csv:101205310 301.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00531 Cla-Chr5:4901032 Cla05g00532 Cla-Chr5:4903562 4.41E-52 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g524 . . . . . Bpe14g01195 . . . . . Cma14g01719 . Car14g01552 . . . . . . . . . . . . . . . . . . . . . Lsi05g01615 . . Cme06g00598 . . . . . Bpe13g00601 . . . . . . . . . . . . . . . . . . Cla05g00531 Cam05g0582 Cec05g0592 Cco05g0590 Clacu05g0579 Cmu05g0549 Cre05g0618 . Csa03g01314 Chy06g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006036 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 5 1 2 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61018 PF13302 Acetyltransf_3 1.60E-25 CL0257 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00531 Cla_Chr05 FPKM 16.163752 15.802261 50.576904 43.553993 30.698761 36.616596 33.561684 69.424828 72.006927 70.044807