Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00537 ATGGAAATGCTCAGCCACTCAACCTCCGTCCTCCCTCTTCAACTTCACACATACCCCACCAGACCCACCGCTCTCTCCGCCGCTCTCTCCTCCGCCTCCAGCCTCTTCCACCTCAAACAAGTCCACGCTCAAATCCTTCGCTCCAAACTCGAACGCTGTGATTCCAATTCCCTTCTTTTTGAACTTATTCTTTCCTCTTGTGCTCTCTCGCCTAGCCTCGACTATGCCCTCTCTGTGTTTGATCAAATTCCCCAGCCCAAGACCCGTCTCTGCAACAAGCTTCTGCGCCAATTATCACGAGGTTCTGAGCCGGAGTTTACGCTTTTTGTATACGAGAAGATGAGGGCGGAGGGTCTGAGTTTGGATAGGTACTGCTTCCCTCCGCTGTTGAAAGCTGCTTCGAGGAATCTTTCCTTGAGAACGGGGATGGAGATTCATGGGCTCGCGTCGAAGTTGGGATTTGGGTCGGACCCATTTGTGGAGACGGGTTTGGTTAGAATGTACGCAGCCTGTGGACGGATAATGGAAGCTCGGTTGGTGTTTGATAAAATGTCTCACAGGGATGTCGTTGCTTGGAGCATCATGATTGATGGGTATGAAGCTAATGTTGTTGCTCTGCATTTACTAGTGAAGGTTAATGTGTATCTTTCTATCTTATCATTTTCCAGTTTAAATGCATGGCTGTTTAGGAGACAAATTACTGCGGAACTTATATTTGCCCCTTATCCTCAAATATACAGGTATTGCTTAAGTGGCTTTTATGATCTTGCCTTTCAACTCTTTGAAGAAATGAAGAGAACAGAGTTGGAACCAGATGAGATGATTCTTTCTACAGTTCTTTCTGCATGCGCTCGTGCTGGAAATTTGGATTTTGGAACAAAAATACACGAGTTCATTACTAAGAAGAATATTGTCATGGATCCTCATTTACAAAGTGCTCTCATCACAATGTATGCGAGCTGTGGCTCCATGGACTTGGCTTGGGATTTCTATGAAAAGATTTCCCCCAAGAACATGGTTGTTTCGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGACAGATTGGAGAAGCTCGCTACGTGTTTGATCAGATGGTAGAGAAGGACTTGATATGTTGGAGCGCAATGATTTCTGGCTATACAGAGAGTGACTGCCCTCAAGAGGCTCTTGTATTATTCAAGAAAATGCAACAGCAGGGAATGAAACCTGATGTAGTCACCATATTGAGTGTTATTTCAGCTTGTGCTCATCTTGGCGCATTAGATCAAGGCAAATGGATACAAACTTATGTTGATAAAAATGGGTTTGGCAAGGCATTATCTATCAATAATGCACTCATTGATATGTATGCCAAATGTGGGAGTCTAGAAGGAGCAAGAAAAGTCTTTGGAAAGATGCCAAAGAAAAATGTAATATCTTGGACAAGTATGATCCATGCTCTTGCAATGCATGGAGATGCTCCTAATGCTTTAAGCTTATTTCATCAAATGAAAGTTGAAAATGTTGAGCCTAATTGGATCACATTTGTAGGGGTGCTTTATGCTTGTAGCCACGGAGGTCTAGTTGAGGAGGGCCGAAGAATATTTCATTCAATGACCGATGAGTATGGCATAAGTCCCAAGCATGAACACTTTGGTTGCATGGTTGACCTCTTTGGCCGTGCAAATCTTCTGAGAGAAGCTCTTGAGGTGATTGAGGCAATGCCATTTGCTCCTAATGCTATTATTTGGGGATCCCTTATGGCTGCTTGTCAGATCCACGGTGAGACTGAGTTAGGAGAATTTGCTGCTAAACAAGTTCTCAAGCTCGAGCCTGATCATGATGGGGCCCTTGTCGTCTTATCAAACATATACGCTAAAGAAAGAAGATGGGAAGACGTTGGGGAAGTTAGAAAACTAATGACCAAGATGGGCGTTTCCAAAGAGAGAGGATGCAGTAGAATTGAATTGAACAATGAGGTCCATGAATTTCAAATGGCAGATAGAAATCACAAGCAAGCAGATCAAATACATCAGAAATTAGATGAGGTAGTTCAAAAGTTGAATCTGGCTGGTTATACGCCACAGACAAATTATGTGCTCGTTGATTTAGACGAAGAGGAAAAGAAGGAATTAGTCCTCTGGCACAGCGAGAAATTGGCACTTTGCTATGCCCTCATGAATGAAGGGCCACGCATTTGCATTATAAAGAACCTTCGAATTTGTGAGGATTGTCATGCTTTTATGAAATTAGCCTCAAAAGTATATGCCAGAGAGATCATCATTAGGGACAGAAGTAGATTTCACCATTACAGAGACGGTTTGTGTTCTTGTAAGGACTACTGGTGA 2328 43.34 MEMLSHSTSVLPLQLHTYPTRPTALSAALSSASSLFHLKQVHAQILRSKLERCDSNSLLFELILSSCALSPSLDYALSVFDQIPQPKTRLCNKLLRQLSRGSEPEFTLFVYEKMRAEGLSLDRYCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAACGRIMEARLVFDKMSHRDVVAWSIMIDGYEANVVALHLLVKVNVYLSILSFSSLNAWLFRRQITAELIFAPYPQIYRYCLSGFYDLAFQLFEEMKRTELEPDEMILSTVLSACARAGNLDFGTKIHEFITKKNIVMDPHLQSALITMYASCGSMDLAWDFYEKISPKNMVVSTAMVSGLAKGGQIGEARYVFDQMVEKDLICWSAMISGYTESDCPQEALVLFKKMQQQGMKPDVVTILSVISACAHLGALDQGKWIQTYVDKNGFGKALSINNALIDMYAKCGSLEGARKVFGKMPKKNVISWTSMIHALAMHGDAPNALSLFHQMKVENVEPNWITFVGVLYACSHGGLVEEGRRIFHSMTDEYGISPKHEHFGCMVDLFGRANLLREALEVIEAMPFAPNAIIWGSLMAACQIHGETELGEFAAKQVLKLEPDHDGALVVLSNIYAKERRWEDVGEVRKLMTKMGVSKERGCSRIELNNEVHEFQMADRNHKQADQIHQKLDEVVQKLNLAGYTPQTNYVLVDLDEEEKKELVLWHSEKLALCYALMNEGPRICIIKNLRICEDCHAFMKLASKVYAREIIIRDRSRFHHYRDGLCSCKDYW 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4936028 4938507 - ClCG05G005100.1 Cla05g00537 272027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00537 775 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 351 768 - -
Cla05g00537 775 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 354 - -
Cla05g00537 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 368 IPR002885 -
Cla05g00537 775 Pfam DYW family of nucleic acid deaminases 685 775 IPR032867 GO:0008270
Cla05g00537 775 Gene3D Tetratricopeptide repeat domain 339 440 IPR011990 GO:0005515
Cla05g00537 775 Gene3D Tetratricopeptide repeat domain 245 338 IPR011990 GO:0005515
Cla05g00537 775 Gene3D Tetratricopeptide repeat domain 441 677 IPR011990 GO:0005515
Cla05g00537 775 Gene3D Tetratricopeptide repeat domain 90 205 IPR011990 GO:0005515
Cla05g00537 775 PANTHER - 351 768 - -
Cla05g00537 775 PANTHER - 19 354 - -
Cla05g00537 775 Pfam PPR repeat family 368 416 IPR002885 -
Cla05g00537 775 Pfam PPR repeat family 469 516 IPR002885 -
Cla05g00537 775 Pfam E motif 587 649 IPR046848 -
Cla05g00537 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Cla05g00537 775 Pfam PPR repeat 247 266 IPR002885 -
Cla05g00537 775 Pfam PPR repeat 164 187 IPR002885 -
Cla05g00537 775 Pfam PPR repeat 545 568 IPR002885 -
Cla05g00537 775 TIGRFAM PPR: pentatricopeptide repeat domain 371 405 IPR002885 -
Cla05g00537 775 TIGRFAM PPR: pentatricopeptide repeat domain 472 506 IPR002885 -
Cla05g00537 775 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
Cla05g00537 775 TIGRFAM PPR: pentatricopeptide repeat domain 444 470 IPR002885 -
Cla05g00537 775 TIGRFAM PPR: pentatricopeptide repeat domain 245 273 IPR002885 -
Cla05g00537 775 TIGRFAM PPR: pentatricopeptide repeat domain 343 370 IPR002885 -
Cla05g00537 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00537 - - - bhj:120088878 1338.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00537 Cla-Chr5:4936028 Cla09g00265 Cla-Chr9:2625152 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g518 . . . . . . . . . . Cma06g01402 . Car06g01210 . . Cpe08g00265 . Bhi01g00798 . . . . . . . . . . . . . Cone14ag0857 . . . Lsi05g01611 . . . . . . . . . . . . Cmo06g01406 . . . . . . . . . . . . . . Cla05g00537 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014354 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00537 Cla_Chr05 FPKM 1.044433 0.658601 0.420306 0.123024 2.904992 2.290482 2.624343 0.074656 0.0 0.0