Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00540 ATGTCGGGGGATCCTGTGGAGACTAAAGTTCTTGAGGATACAAATGGCTGTACACCTAGGGCGAAGAAAAATGAACTGATCCTTAGGCCAGTTTCTCAAGATGAATCTGGGGAGGGCTTGCCATATGCTCCTGAAAATTGGCCCAATCCTGGTGATAACTGGAGTTGGAGGGTGGGGAAGAGAGTTGCTATAACTGGCCATTTTCTGGATAGGTACCTTTATTCTCCTCGTGGTATTGGCACTTCTGAGAACTCAGCTCGTAAAGGGCATGGTTTTGCAAGCAAGCTTTCAGTTGAAAGATATATCCAGTCTGAGTTTCCCAATGCAGACATTGATGCATTTTTTGCCTCATTCAGTTGGAAGATACCAGCAAAAAAGTCATCTTTAGCGCAAGGTATTCAAGTAAAACAAATTTCATGCCCTCTACCTTCAAAAGAGATGGAAGAATGCTCTGCATCTGAGTCCCAGATTGATAGAGTGGGTTGCAAGGCTGGAAATAAGAACTGTAATAGTTTATCTGTTGCAGAGAATCCATCTTCATTAAAATCCATGTCCTGTGATATTTGCTGCAGCGAACCTCGGTTTTGCCGTGATTGCTGCTGTATACTATGCAGCAAGATTATAGACACGACCACAGAAAGTTATAGCTACATAAAATGTAAAGCAGTGGTGGGTGATGGTTATATTTGTGGACATCATGCTCATATAAAATGTGGTCTTAAATCATATACAGCTGGGACAGTTGGAGGAAGCATTGGATTGGATGCTGAGTATTATTGTCGACGTTGTGATGCCAGAACGGATTTGGTATCACATGTAGAAAGATTTTTGCAGTCATGTCAATCAGCTGACTGTCGAGATGATATTGAGGAGATCTTAAGCCTTGGTTTCTGCATTTTGCGTGGTTCACACAAAATGAGAGCAAAGGAGCTGTTTAGAAATATTGAATTGAACATTGAAAAGCTTAAATCTGGGACTTGCTTGGAAGAGATTTGGAAGATGGAGGAAGACAGCTCAGCGAATTGCACTGATGCACCTGATAATGCTGATTCTACAGAAGGTTCTCATGACACTTCAGACTCCATTATAAGCTCAGAATGGACTATGTCCACCCCTTTTGATCATTGGATTGAGTCCCTAAAACTTGAAGACGAGATTGATCAGGTTTTGCAGGGACTGAAAAGATCACAAGAGTTCGAGTATAATTTGGCAGAAGAAAAGCTTCTGTTACATAAAAATTATCTACATAATCTCTTTCAGCAACTTGACAAGGAGCAAACTGAACTCAGACATCAAACATCATCAACGGAACAAAATGCCGTAACAAACAGAGTGGACCAAATAAAACGAGAAGTAAAGAGACTCAAGAGAATGGAAAAGGTTGCTGATGGATTTGGAATGACTCCAAAAGATATCCTCAAGGAGGACTTCGATTTGGATGTTGAGTAG 1449 41.06 MSGDPVETKVLEDTNGCTPRAKKNELILRPVSQDESGEGLPYAPENWPNPGDNWSWRVGKRVAITGHFLDRYLYSPRGIGTSENSARKGHGFASKLSVERYIQSEFPNADIDAFFASFSWKIPAKKSSLAQGIQVKQISCPLPSKEMEECSASESQIDRVGCKAGNKNCNSLSVAENPSSLKSMSCDICCSEPRFCRDCCCILCSKIIDTTTESYSYIKCKAVVGDGYICGHHAHIKCGLKSYTAGTVGGSIGLDAEYYCRRCDARTDLVSHVERFLQSCQSADCRDDIEEILSLGFCILRGSHKMRAKELFRNIELNIEKLKSGTCLEEIWKMEEDSSANCTDAPDNADSTEGSHDTSDSIISSEWTMSTPFDHWIESLKLEDEIDQVLQGLKRSQEFEYNLAEEKLLLHKNYLHNLFQQLDKEQTELRHQTSSTEQNAVTNRVDQIKREVKRLKRMEKVADGFGMTPKDILKEDFDLDVE 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4953126 4958250 - ClCG05G005130.1 Cla05g00540 272030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00540 482 Coils Coil 438 458 - -
Cla05g00540 482 MobiDBLite consensus disorder prediction 339 360 - -
Cla05g00540 482 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 3 482 - -
Cla05g00540 482 Pfam PHD - plant homeodomain finger protein 165 298 IPR032881 -
Cla05g00540 482 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 3 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00540 - - - cmo:103483705 903.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00277 Cla-Chr2:2734318 Cla05g00540 Cla-Chr5:4953126 2.19E-06 dispersed
Cla05g00540 Cla-Chr5:4953126 Cla09g00364 Cla-Chr9:3565471 1.32E-07 dispersed
Cla05g00540 Cla-Chr5:4953126 Cla02g00916 Cla-Chr2:13900794 1.49E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g513 . . . . . . . . . . . . Car06g01212 . Sed12g0930 . . Bhi01g00805 Tan10g0838 Cmetu06g0605 . . . Lcy11g1549 . . . . . . . . . . Cone4ag0247 Lsi05g01608 . . Cme06g00606 Blo02g00536 . . Bda13g00118 . . . . . Cmo06g01409 . . . . . . . . . . . . . . Cla05g00540 Cam05g0589 Cec05g0599 . . . . . Csa03g01326 Chy06g00577 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003503 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00540 Cla_Chr05 FPKM 4.323454 4.003042 4.430706 4.268737 5.928188 6.351676 6.239785 5.202172 5.558277 5.940208