Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00542 ATGCCGCTTCTCTCGCCAAACTCGCTCGCTTCACTGGTCGAATTGGCCGTATCGGTTCGTTCTTCTCTTCTTGGCCGAGCCGCCCACGCCCAAATTCTCAAAACCCTAAGAACCCCTCTTCCAGCCTTCCTCTACAACCACCTCGTGAACATGTACGCTAAACTCGATCATCTTGACTCGGCCGAACTCATCCTCAAACTCGCCCCTTGCCGTTCTGTCGTCACTTGGACCGCCCTCATCGCTGGTTCCGTCCAAAACGGCTGTTTTGCTTCCGCTCTGCTTCACTTCTCCGACATGCTAAGTGACTGTGTTCGACCCAATGATTTCACTTTCCCTTGCGCGTTCAAGGCCACCACTGGCCTTCGCATGGCCGTGACAGGCACACAGCTACACGGACTTGCGGTTAAGGAGGGATTAATAAACGATGTCTTCGTCGGGTGCAGTGTCTTCGACATGTACAGCAAATTGAGCTTTCTTAATGACGCTTACAAGATATTTGATGAAATGCCTCATCGAAACCTCGAGACGTGGAATGCGTATATATCCAATTCCGTGCACCATGGGCGACCTGAAGACTCTGCCAGTGCATTTATTGAGCTACTTCGGGTTGGTGGGAAGCCAGATTCCATAACATTTTGTGCTTTTTTCAATGCGTGTTCAGACAAACTAGGCTTGGAGCCTGGGTGTCAGCTTCATGGGTTCATTATTAGAAGTGGGTATGGGCAGAATGTCTCTGTTTCAAATGGGTTGATTGATTTTTATGGGAAATGTGGGGAAGTTGAATGTTCTGAGATGGTTTTTGACAGAATGGGAGAGCGGAACAGCGTATCTTGGTCCTCTTTGATAGCTGCTTACGTTCAAAACAATGAGGAGGAGAAGGCTTCCTGCTTATTCTTGCGAGCGAGGAAAGAAGATATCAAACCAACTGATTTTATGGTATCAAGTGTGCTTTGTGCCTGTGCTGGTCTTTCAGAAATCGAGTTTGGACATGCTGGGGAAGTTGAGGAAGGAGATGCAGGAGGCTACTGGTTGCATTGCAGACACCAAGAGCAGCCACGCAGGGACGAAAAACTGCAGCAGCCTCACCAGAACGACGAGCAGCTGGAAACCGTCAAGTATGGGGACGTTTTCAACGTCTCGGGTGACCTGGCTGCGAACCCCATCGCACCTGAGGATGCGCGCATGATGGGTAGTGCTGAAACGAGGGTGTTGGGGCAAGTGCCTCAGGCTGGTCCGGCTGATGTCATGCGAGCCGCCGCCGCTCATAATGTCCAAGTTGGTCTTCTTAGTAGCCGTGATGTTAGCGATGTTGCTAAGAATCAAGGCATTAATATCAGCGAGACCGATGTTCCCGGAGCCCGTCTCGTTACTGAATGCGTTGCCGGACAGGTTGTTGGACAGTATTTGGACACGACGATGGCGAGTGGGGTAGGAACGCCGGAGCAGAATGTAATCACGATTGGACAAGCCCTGGAAGCTGCATGTCAAACGATAGGAAACAAGCCGGTGGAACGAAGTGATGCTGCAGCAATTCAAGCCGCAGAGGTCCGAGCAACCGGCAACAATGTCATAAGCCCAGGTGGGCTTGCCGCCACTGCTCAGGCGGCAGCAACTTTCAATGCCAGAATGGATCGAGACGAGGACAAGATCAAGCTCAGCTATGTCTTAACGGGCGCAACTGAAAAACTGACGACAGACAAGGCGGTGAGCCGGAAGGATGCGGAGGGGGTGGTGAGCGCAGAGCTGAGGAACAATCCAAGCCTGACGGCACAACCAGGTGGGGTGGCAGCATCCATTGCTGCTGCTGCGAGACTGAATGAGGACGATGCAGAGGGGATGGCGAGCGCAGAGCCGAAGAACAATCCAAGCCCGACGACACACCCAGATGGGTTGGCGGCCTCCATCATCGCCAGCTCGGAACTGAATGAGGGGGGTGCAGGTATATGA 1947 52.39 MPLLSPNSLASLVELAVSVRSSLLGRAAHAQILKTLRTPLPAFLYNHLVNMYAKLDHLDSAELILKLAPCRSVVTWTALIAGSVQNGCFASALLHFSDMLSDCVRPNDFTFPCAFKATTGLRMAVTGTQLHGLAVKEGLINDVFVGCSVFDMYSKLSFLNDAYKIFDEMPHRNLETWNAYISNSVHHGRPEDSASAFIELLRVGGKPDSITFCAFFNACSDKLGLEPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIKPTDFMVSSVLCACAGLSEIEFGHAGEVEEGDAGGYWLHCRHQEQPRRDEKLQQPHQNDEQLETVKYGDVFNVSGDLAANPIAPEDARMMGSAETRVLGQVPQAGPADVMRAAAAHNVQVGLLSSRDVSDVAKNQGINISETDVPGARLVTECVAGQVVGQYLDTTMASGVGTPEQNVITIGQALEAACQTIGNKPVERSDAAAIQAAEVRATGNNVISPGGLAATAQAAATFNARMDRDEDKIKLSYVLTGATEKLTTDKAVSRKDAEGVVSAELRNNPSLTAQPGGVAASIAAAARLNEDDAEGMASAEPKNNPSPTTHPDGLAASIIASSELNEGGAGI 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4961124 4967487 + ClCG05G005140.2 Cla05g00542 272032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00542 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Cla05g00542 648 PANTHER OS11G0583200 PROTEIN 4 331 - -
Cla05g00542 648 PANTHER OS07G0578800 PROTEIN-RELATED 4 331 IPR045215 GO:0003723|GO:0009451
Cla05g00542 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Cla05g00542 648 Gene3D Tetratricopeptide repeat domain 228 329 IPR011990 GO:0005515
Cla05g00542 648 Gene3D Tetratricopeptide repeat domain 128 226 IPR011990 GO:0005515
Cla05g00542 648 Gene3D Tetratricopeptide repeat domain 7 124 IPR011990 GO:0005515
Cla05g00542 648 Pfam PPR repeat 248 274 IPR002885 -
Cla05g00542 648 Pfam PPR repeat 276 305 IPR002885 -
Cla05g00542 648 Pfam PPR repeat 148 173 IPR002885 -
Cla05g00542 648 Pfam PPR repeat 74 102 IPR002885 -
Cla05g00542 648 MobiDBLite consensus disorder prediction 607 632 - -
Cla05g00542 648 Pfam Seed maturation protein 371 425 IPR007011 -
Cla05g00542 648 Pfam Seed maturation protein 485 542 IPR007011 -
Cla05g00542 648 Pfam Seed maturation protein 550 607 IPR007011 -
Cla05g00542 648 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00542 - - - csv:101221353 621.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00542 Cla06g00589 CCT
Cla05g00542 Cla06g00589 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01562 Cla-Chr3:31339484 Cla05g00542 Cla-Chr5:4961124 8.47E-57 dispersed
Cla05g00542 Cla-Chr5:4961124 Cla01g01124 Cla-Chr1:18656818 6.12E-14 dispersed
Cla05g00542 Cla-Chr5:4961124 Cla06g00589 Cla-Chr6:7176973 1.05E-69 wgd
Cla05g00542 Cla-Chr5:4961124 Cla09g00663 Cla-Chr9:6309256 4.77E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g507 . . . . . . . . Cmo08g01116 . . . Car06g01215 . Sed02g1319 Cpe08g00260 Cpe03g01437 Bhi01g00811 Tan10g0842 Cmetu06g1654 Lac12g2274 Hepe05g1553 . . Cla06g00589 Cam06g0628 Cec06g0631 Cco06g0634 Clacu06g0614 Cmu06g0607 Cre06g1375 . . Cone7ag0256 . Lsi05g01606 . . Cme06g00609 . Blo07g00220 Bda11g00578 Bda13g00120 . Bpe13g00605 . Bma06g01557 Sed06g0669 Cmo06g01411 . Cma08g01139 . Car08g01023 . . Cpe17g00150 Bhi12g01703 Tan06g0980 Cmetu01g1750 Lac12g2274 Hepe03g0204 . Lcy13g0287 Cla05g00542 . . . . . . Lsi09g01314 Csa03g01328 Chy06g00579 Cme01g01569
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010596 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00542 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.534149 0.0