Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00543 ATGTCCACTCTGAAAAAAAGAAATTTCCATCTCTGGTTCTCAAAGCTCCGCTGCTTTCCGGCCGCCGTGAAACCCTCATCGCCGCCGCAAGTGCTCAAGGAAAAAGCCCTTTCCATTACCCACTTGGAAAACTCCGACTACTCCTCTACCTCCACCGCTGCTGATGACGGTTTCTTCTCCGACGACTCCACTTCCGATTCTGATGCCATCGTCCCTGACTTCTCTGCCGTCGTCGCTTCCCACCGCTTCTTCTTCTCCTCCCCCGGTTGCTCCAACTCTATTTTCGACTCCTCTCCTGATACCCACCACGGCGCCGTCGTTGACGCCGCCGTACACGGCGGCGTTAAAGTACGGAAGGTTTCAATGGACCCATTTGTCGATTTTAGGGCTTCAATGCAGGAGATGGTCGAAGCGAGAGATCGGCCGGTGGACGTCCGGCGAGACTGGCAGTATCTGCAGGAACTTCTTGTTTGTTATCTTCAAATCAACCCCGTTGATACCCACAAGTTTATATTAAGAGCTTTCTCCGACCTCGTTGTTTATTTGCTGGAATCCTCGCCGGAGTCATTCTCCAACCACCGTCTTCGGCGGCACAACATCAACTCACGCAGCTGGTTGGTGCAATAA 627 52.79 MSTLKKRNFHLWFSKLRCFPAAVKPSSPPQVLKEKALSITHLENSDYSSTSTAADDGFFSDDSTSDSDAIVPDFSAVVASHRFFFSSPGCSNSIFDSSPDTHHGAVVDAAVHGGVKVRKVSMDPFVDFRASMQEMVEARDRPVDVRRDWQYLQELLVCYLQINPVDTHKFILRAFSDLVVYLLESSPESFSNHRLRRHNINSRSWLVQ 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4972750 4973376 + ClCG05G005155.1 Cla05g00543 272033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00543 208 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 116 183 IPR006458 -
Cla05g00543 208 ProSiteProfiles OVATE domain profile. 117 181 IPR006458 -
Cla05g00543 208 PANTHER TRANSCRIPTION REPRESSOR OFP12 1 189 - -
Cla05g00543 208 Pfam Transcriptional repressor, ovate 121 182 IPR006458 -
Cla05g00543 208 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 189 IPR038933 GO:0045892
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00543 - - - bhj:120076061 362.073
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00543 Cla06g00588 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00543 Cla-Chr5:4972750 Cla08g00848 Cla-Chr8:20882870 4.88E-15 dispersed
Cla05g00543 Cla-Chr5:4972750 Cla06g00588 Cla-Chr6:7171814 2.41E-41 wgd
Cla05g00543 Cla-Chr5:4972750 Cla09g00662 Cla-Chr9:6290146 2.62E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g506 . . . . . . . . . . . Cma14g01708 . Car14g01543 Sed02g1321 . Cpe03g01436 Bhi01g00812 Tan10g0843 Cmetu06g2511 . Hepe05g1552 . Lcy11g1546 Cla06g00588 Cam06g0626 Cec06g0630 . Clacu06g0613 Cmu06g0606 Cre06g1374 Cone14ag0855 . . . Lsi05g01605 . . Cme06g00610 . . . Bda13g00121 . . Bma02g00846 . Sed09g1121 . Cmo14g01751 . . . . . . Bhi12g01704 Tan06g2518 Cmetu01g1315 Lac12g2275 Hepe03g0203 . . Cla05g00543 Cam05g0593 Cec05g0603 Cco05g0600 Clacu05g0590 Cmu05g0560 Cre05g0629 Lsi09g01315 Csa03g01329 Chy06g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002886 2 2 0 2 1 2 3 1 2 2 2 2 3 1 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61020 PF04844 Ovate 1.20E-21 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00543 Cla_Chr05 FPKM 9.504361 11.122811 40.107124 38.78587 7.022501 8.312375 8.524105 32.56514 31.079618 33.926556