Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00544 ATGTTCTTGAGGAGAGGGTTTGCTTTTGCTAGCCCTCAATTTGTTTGGAGGGCCTGCAGCTTTTGCTCAAAAGCATTGCCCATGGGAAGCCGTGGAAGCAAGAATGAAAGGGTAGCTCATTCAGATAGCATTGTAAATGGTTCATCCAGGCCTCAGATTTCTCCATCGTTCCCTGATGGTAATCCTTATTCAGCTGCTTATGATGTTGAACTTGTAGATGATGATACTTGGGAAGTTTCATGTGGTTTAGCAAGAGCATGGGAAGGGAGAGAGAAGGGCTGGTCTGGCCTTGAAAATAGATACTTCTTAGAGGATGAGGCTCATGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACACGGTAATCTCTTCTATAAACTTGACCGAGGTTCCAAAGAGTTTGAAGAATATAGCCTTGATTTTCATCGTAAGAAAAAGTCTACAAAGGAAAAGGAAGATATGCAGAACAGCAGAAGCAAAGTCAATGATAAACTTACTAAGTGTTCGGCAAGTGGCCATGTAAAGCTTCCTGAGCATGTGAAGAACAAATACGTAATTGTTGAAAGAGAGAATGATGGTGTTGAGAAGAAGCTTAGGACACCCACATTTAATCAACTTACTGGTCCTTACCACGAGCCGTTTTGTCTTGATATATACATATCAAAGGCCTCAGTTCGAGCCTGTGTCATTCACCGAGTGACTAGTAAGGTTGTTGCTGTGGCACATTCAATATCTAAAGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTAGCCCAGAGAGCATTGGCTGATGATATCCATAATCTGGTATACACTCCAAGAAAAGGCGAGAGGATAGAAGGGAAGCTTCAAATTGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTTAAGATCAAAATGGCAAGCTCAAGTGAGAGTGAACGCAAGGAACCCGTGAACGAGCAAATGGTTGCAAACATGTATGGCGCTTTAAGGTCTGAACTCAATCAGATATACTCAAAAATCACAGAACTTGAAATGGAAGTCAGTGAGCACTCTCTGGTCATTTCTGCAATTGAGCCACTTGACCCATCAAGAAGATGCTACAGAATGATCGGTGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGCAACAAAGAGGGACTCGAGGAGGTTATTTCCAGGCTCAATGAGGCCTTGGAGAAGAAGAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTAGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACACTGGGCGAAAAGAGGGTGCAGCCCAAGGAGTGTTAGTAGGCCCTGCAGGTGAAAGTTAA 1401 43.33 MFLRRGFAFASPQFVWRACSFCSKALPMGSRGSKNERVAHSDSIVNGSSRPQISPSFPDGNPYSAAYDVELVDDDTWEVSCGLARAWEGREKGWSGLENRYFLEDEAHDPVDYCDSDFDDIDNMRIHGNLFYKLDRGSKEFEEYSLDFHRKKKSTKEKEDMQNSRSKVNDKLTKCSASGHVKLPEHVKNKYVIVERENDGVEKKLRTPTFNQLTGPYHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKIKMASSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIRKPDGEAKEEDTGRKEGAAQGVLVGPAGES 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4977855 4980852 - ClCG05G005160.1 Cla05g00544 272034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00544 466 Coils Coil 397 438 - -
Cla05g00544 466 Gene3D - 330 439 IPR009053 -
Cla05g00544 466 CDD Ribosomal_L18_L5e 217 313 - -
Cla05g00544 466 Gene3D - 202 314 - -
Cla05g00544 466 MobiDBLite consensus disorder prediction 437 466 - -
Cla05g00544 466 SUPERFAMILY Translational machinery components 203 313 - -
Cla05g00544 466 PANTHER EXPRESSED PROTEIN 46 323 - -
Cla05g00544 466 SUPERFAMILY Prefoldin 337 435 - -
Cla05g00544 466 MobiDBLite consensus disorder prediction 437 452 - -
Cla05g00544 466 Coils Coil 340 360 - -
Cla05g00544 466 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 223 314 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cla05g00544 466 Pfam Prefoldin subunit 334 436 IPR002777 GO:0006457|GO:0016272|GO:0051082
Cla05g00544 466 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 46 323 IPR005484 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00544 K02881 RP-L18, MRPL18, rplR; large subunit ribosomal protein L18 - csv:101213193 567.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00544 Cla-Chr5:4977855 Cla09g00773 Cla-Chr9:7776008 5.33E-26 dispersed
Cla05g00544 Cla-Chr5:4977855 Cla05g00547 Cla-Chr5:4985493 1.75E-12 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g505 . . . . . Bpe14g01188 . . . . . Cma14g01706 Car06g01217 Car14g01541 . Cpe08g00258 Cpe03g01434 Bhi01g00814 . . . Hepe05g1550 . . . . . . . . . Cone14ag0854 . . . Lsi05g01603 . . . . . . . . . Bma02g00847 . . . Cmo14g01749 . . . . . . . . . . . . . Cla05g00544 Cam05g0595 Cec05g0605 Cco05g0602 Clacu05g0592 Cmu05g0562 Cre05g0631 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00544 Cla_Chr05 FPKM 2.406911 2.954717 0.746209 0.976505 4.785188 5.748738 5.159707 0.0 0.0 0.0