Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00550 ATGGGGAAGAATGATCACAGAGTTGAATCTGTACTTCATCTCCTTCGTAAACAATCCCCACTTTCACTCAAACAGGAGAAATTTTGTAATACAGCTTGTGTTGAGCGGTTTCTGAAGGCTAAAGGAGATAATGTGAAGAAGGCTGTTAAGAGCTTGAGGGCTTGTCTTTCTTGGAGAGACACCATTGGCATTGACCATCTGATCGCCGATGAGTTCTCCGCTGAGTTGGCCGACGGCGTCGCTTATGTCGCGGGCCACGACGAAGAATCTCGCCCCGTCTTGATTTTCCGGATTAAGCAGGATTATCAGAAGTTCCATTCCCAGAAACTGTTTACTCGTTTGGTAGTGTTCACGCTAGAAGTAGCCATTGGGACCATGCCAAAAAACGTGGACCAAATGATAATCCTTTTCGACGCAAGCTTTTTCAGGTCGGGATCGGCTTTTATGAACTTATTAGTGGGAATGCTGAAAATGGTGGCTGATTACTATCCCGGACAACTTCATTCAGCCTTTGTTATTGATCCTCCTTCTCTTTTCTCATATCTTTGGAAGGGAGTTCGACCGTTCGTTGAGCTATCAACGGTGACGATGGTAATATCATCGTTAGACTTTGAAGATTCGTTAGAGTTCAACGACTTCGCTGCCTATCCGCGAGCCTCCTCCCTCCGATTCGATCAAGCGTCAATACAATCAACGGGCAAGATCGGCTCATCCGCATCCTCACGCTTCTCCTTCACCGTATCCCATCACTTCGACTCACTCAAGCCCTGGTACCTCAGTCTAACTGACACGTCAGCTTCTAAAGTAGGACCCACCAGTCCTTCTCCACTGGGCCCCGCACTCATCTCCCCACTCAACGCTCGTTCCCTGTCGTTCGCATCTCCGGCTGCCAGAATGCCACGTGGCATATTCAACGACGGAAGTAGTTTCAGCTCGAGACTGACCAGGAAAAGCCTGTTCCCGTCGACGCCGCTGCCGCCGAAAAGCGCCGCCATGGACGGTGGTGGTAAAAAGCCCAAAAATCAACCAAGGACCCCACGGCCGTCGTTCCTCCAATCGCCGGCGGTGTTCTTCCGAAGAGAGTGCCACGTCAGCAGAACGGAGAAAAACCGGGAAGCTTTCCGGTCGGTTTTGAAATTCTACAGAAGACCGTACGATGAAATGGTTTATAGGTCAAAGATGAGGCCCCCACTTGGTGGATTGATCTCCATCGTCACACCACATCTTAGACGTCGACACGTGTCAATGTCTCAACGGTTCTGA 1263 49.8 MGKNDHRVESVLHLLRKQSPLSLKQEKFCNTACVERFLKAKGDNVKKAVKSLRACLSWRDTIGIDHLIADEFSAELADGVAYVAGHDEESRPVLIFRIKQDYQKFHSQKLFTRLVVFTLEVAIGTMPKNVDQMIILFDASFFRSGSAFMNLLVGMLKMVADYYPGQLHSAFVIDPPSLFSYLWKGVRPFVELSTVTMVISSLDFEDSLEFNDFAAYPRASSLRFDQASIQSTGKIGSSASSRFSFTVSHHFDSLKPWYLSLTDTSASKVGPTSPSPLGPALISPLNARSLSFASPAARMPRGIFNDGSSFSSRLTRKSLFPSTPLPPKSAAMDGGGKKPKNQPRTPRPSFLQSPAVFFRRECHVSRTEKNREAFRSVLKFYRRPYDEMVYRSKMRPPLGGLISIVTPHLRRRHVSMSQRF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5017772 5020996 + ClCG05G005190.2 Cla05g00550 272040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00550 420 SUPERFAMILY CRAL/TRIO N-terminal domain 4 71 IPR036273 -
Cla05g00550 420 SMART sec14_4 75 217 IPR001251 -
Cla05g00550 420 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 69 217 IPR001251 -
Cla05g00550 420 Pfam CRAL/TRIO domain 78 194 IPR001251 -
Cla05g00550 420 MobiDBLite consensus disorder prediction 316 350 - -
Cla05g00550 420 SUPERFAMILY CRAL/TRIO domain 70 191 IPR036865 -
Cla05g00550 420 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 420 - -
Cla05g00550 420 Gene3D - 3 215 IPR036865 -
Cla05g00550 420 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 420 - -
Cla05g00550 420 CDD SEC14 78 208 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00550 - - - csv:101206735 785.023
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00550 Cla-Chr5:5017772 Cla11g01502 Cla-Chr11:28669695 7.05E-21 dispersed
Cla05g00550 Cla-Chr5:5017772 Cla05g01946 Cla-Chr5:31287122 2.85E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g489 . . . . . Bpe14g01183 . . . . Cma06g01415 . Car06g01220 . Sed02g1245 Cpe08g00256 . Bhi01g00819 Tan10g0850 Cmetu06g1818 . Hepe05g1545 . Lcy11g1540 . . . . . . . Cone14ag0845 . Cone7ag0246 Cone4ag0240 Lsi05g01598 . . Cme06g00614 Blo02g00543 Blo07g00215 Bda11g00573 . . Bpe13g00610 Bma02g00854 Bma06g01552 . Cmo06g01417 . . . . . . . . . . . . . . Cla05g00550 Cam05g0598 Cec05g0609 Cco05g0606 Clacu05g0596 Cmu05g0566 Cre05g0634 . Csa03g01337 Chy06g00584 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004551 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00550 Cla_Chr05 FPKM 4.696078 4.67049 8.912821 6.750377 1.534819 1.476633 1.692286 16.618773 13.012904 14.439711