Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00551 ATGCAGATTATGGCTGAACCAATATACACTGTAGCTTCTGATAGTGAAACTACTGGGGAAGAAAAAACAACATCAACTTTTCCGGAAATTGCAGTTGGAATTGATATTGGTACTTCACAATGTAGTATTGCAGTTTGGAATGGATCTCAGGTAGAGCTTCTTAAGAACACTAGAAATCAGAAAATTATGAGATCATATGTCACCTTCAAGGATGAGACTCCTTCTGGAGGAGTTAGTAATGAGTTAAGCCATGAGTATGACATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCAAGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGCCCATTTGTTGCAGCTTTGGTAAATAATGTATGGAGATCTACCACTCCTGAAGAAGTTCTGGCAATCTTTATCGTCGAACTGAAAGTGATGGCTGAATATCAACTGAAGCGGCCAATTAGAAATGTTGTTTTGACAATTCCAGTTTCATTCAGCCGATTTCAGCTTACTCGGGTTGAACGAGCTTGTGCAATGGCTGGACTTCAAGTTAGATTGATGCCTGAACCAACAGCAGTAGCTTTATTATATGCTCAACAACAGCAGCAGGCTGTACATGAGGGCATGGGCAGTGGAAGTGAAAAAATTGCCCTTATTTTCAACATGGGAGCTGGGTATTGTGATGTTGCTGTGTCGGCGGTAGGAGGAGGAGTGTCACAGATCAGAGCCCTGGCTGGAAGTCCGATAGGAGGTGAAGATCTACTTCAAAACACCATGAAGTATCTTTTGCCAAATTCTGAATCTATATTCTCACACCGTGGAATTGATGAGATCAGAAGGATGGGCTTGCTCCGAGTTGCGACTCAAGATGCTATCCACAAGCTTTCATACCAGTCTAGTGTTCAAATCGATGTCAACTTGGGAAATGGGTCAAAGTTACGCAAGGTTCTAAGCCGAGAGGAGTTTGAGATGGTGAATAGCAAGGTGTTTGAGAAATGCGAGAACCTCATAAAGCAATGCTTGCATGATGCAAGGGTAGGGACCGAAGATTTGAGCGATGTAGTAGTAGTTGGTGGATGTTCATACATACCAAAGATCAGAAATCTTCTGATGGAAATAAGTAAAAAGAAGGCACTTTATGAAGGAATAGATCCTTTAGAAGCTGCCGTTTCTGGTGCAGCTTTAGAAGGTGCAATAGCATCAGGTATTGGCGATCCATTTGGCAGTTTAGATCTTCTTAGCATCCAAGTGACGCCTCTCGCCATTGGAATTCGAGCTGATGGTAACAGCTTTATTCCAATTATCCCCAAGAACACCACAATGCCAGCACGCAAGGAGTTGGTTTTCACAACTGTTCAAGACAATCAAAGTGAAGCCCTGATTGTTGTCTATGAAGGTGAAGAGACAAGAGCAGAGGAAAACCATCTACTTGGCTATTTCAAGATCATTGGAATTCCACCTGCACCCAAAGGAATCCCTGAAATCACTATTTGTATGGACATTGACTCTTCAAATATGCTTAGAGTTCTAGCTTGGGCAACACTCCCAGGTGGTCAACACCCTGCAACTCCCTACATGGAAGTCAAGATGCCAACCGTTGACGACGGACATGGCTGGTGTGCAGAAGCCCTGCATGGAAAATATGGTGCCGCCATGGAATTGGTTACATTGCGGAAGAAAGGCTAG 1725 43.3 MQIMAEPIYTVASDSETTGEEKTTSTFPEIAVGIDIGTSQCSIAVWNGSQVELLKNTRNQKIMRSYVTFKDETPSGGVSNELSHEYDMLSGAAIFNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVRPFVAALVNNVWRSTTPEEVLAIFIVELKVMAEYQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQAVHEGMGSGSEKIALIFNMGAGYCDVAVSAVGGGVSQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGIDEIRRMGLLRVATQDAIHKLSYQSSVQIDVNLGNGSKLRKVLSREEFEMVNSKVFEKCENLIKQCLHDARVGTEDLSDVVVVGGCSYIPKIRNLLMEISKKKALYEGIDPLEAAVSGAALEGAIASGIGDPFGSLDLLSIQVTPLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVQDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGIPEITICMDIDSSNMLRVLAWATLPGGQHPATPYMEVKMPTVDDGHGWCAEALHGKYGAAMELVTLRKKG 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5024101 5025825 - ClCG05G005200.2 Cla05g00551 272041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00551 574 Pfam Hsp70 protein 31 526 IPR013126 GO:0005524|GO:0140662
Cla05g00551 574 Gene3D - 32 411 - -
Cla05g00551 574 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 422 534 IPR029047 -
Cla05g00551 574 SUPERFAMILY Actin-like ATPase domain 30 212 IPR043129 -
Cla05g00551 574 Gene3D - 215 393 - -
Cla05g00551 574 SUPERFAMILY Actin-like ATPase domain 226 412 IPR043129 -
Cla05g00551 574 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 7 573 - -
Cla05g00551 574 Gene3D - 95 150 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 238 248 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 30 43 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 505 521 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 170 190 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 364 380 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 58 70 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 396 416 - -
Cla05g00551 574 PRINTS 70kDa heat shock protein signature 424 443 - -
Cla05g00551 574 CDD HSP70_NBD 32 411 - -
Cla05g00551 574 PANTHER HEAT SHOCK PROTEIN 70KDA 7 573 IPR013126 GO:0005524|GO:0140662
Cla05g00551 574 Gene3D Actin; Chain A, domain 4 264 345 - -
Cla05g00551 574 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 426 527 IPR029047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00551 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101206971 1048.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00551 Cla-Chr5:5024101 Cla09g01948 Cla-Chr9:37053583 8.48E-92 dispersed
Cla05g00551 Cla-Chr5:5024101 Cla04g00820 Cla-Chr4:23247541 1.62E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00551 Cla_Chr05 FPKM 14.339594 13.325029 4.548097 5.38184 18.320307 17.836077 18.394598 3.505713 3.521615 3.223324