Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00552 ATGGCTGCCATTAAAGTTTTACATCTTTCTCTCCCAGTGCTTCTCTGTTTTCTTCACTGTTACGCCCAGACCGACAGAATTGGAATTGGGTTCATCAATCCTTTGCTGGGTCGAATAAAAATTGGCCATCATCCTCCCGCGAATTTGCTTTTGGGTTCCACCAGATCATCGATGGAAAATACCTTGTCGGCACAGTGTTCGACAAAATTCCTGAAAGAACTTTGGTTTGGTCTGCCAACAGAGACGACCCGGCACAGGCTGGTTCAAACATTGTTCTCAGAGTCACCGGCGAAATTGTGCTCATTCATGGAAATGGTAAGCAAGTTTCAATCTATAATGGAAAAGACACGAGCTATGCTTCAATGTCCGACGATGGCAACTTTGTGCTGTTCAGTTCCTCCTCCTCCATTCCCATATGGCAGAGCTTCGATTCTCCCACCGATACTCTATTGCCTGGACAGCATTCAAACAATTATATCCACACAAACACCTATAGATTCTGGCCAAATTCAAGACGACGGCAACTTTGTGTTGAAGACTCCAATTCCGCACCCATCAAACAAAGCTTTGATTCGCCGACAGACCCACTCCTTCCTTGATAGGTTTTGGGGGTCGACAAAAAGATGTTCTCCGCAAGAAAACATCTCAGATTTCTCAATTGGGAATTTCATGTTGCAAATGCAAAAGGATGGGAATCTAGTGCTTCTAATTACCACCTTCTCCGATATTAGGTATCGGTTCACAATCGCAACTAACATTCAAAACATTGTCTTAGTGTTCGATAATTCCTCTGCTTTAATCAATTTGACTGTCAATTTTATAGCCCTTGAGGATTACTACCACAGAGCAACAATCGGCGTCCATGGTGATTTCCGACAATATGCTTACCCCAAAACTAATGGCAACGGATGCAAAAGGATTTGGAGAGCCATGAACGACCCTTGTCTTGTGAACACCGTTTGTGGCTTAAATGGTCTCTGCAAATCATCCGACAACGACACAGTAACTTGTGAAAATTCTAGGAAGAATTTCGAAGTCCAGGTGATCGATGATGTCGTTATTGATTTCCCCCCTGGACGTGGTCAATTTTCAAAATTGGCTTCTACAGAAGGCATGGATGTTGAGAGGTGCAAAGAGGCAAATACTCGGAGATGGTTACGCCATGGCTGCAACTTTGAACGAAGATGCGTTAGGAAAAGGACGCCATTAATGAATGCTAGAAATACTTCCAATACTAAAGGATTAAAAACTCTAATTAAAGTGCCTTTGCCATCAGCAAACACGGGTAATTTTCAAGTGCAAGTGCCATCAGAATCAATTTCCGGGAATTCACTTTCCAGGAATTGTTTGATGCAATTAATGGATTCAACAAAATCCTCGGCCAAGGAGCTTCTGGTCCGTCGATGTGGAAATTGCAGTGAAACGCCTCGACAAATGACTGAAATTGTCGAGAAGGAATTTCTGACGGAGGCCACAATCATCAGCTGGACATATCACAAGAATTTGGTCAGATTATTAGGTTACTGCGTCGAAAACGAGAAGAATCGACTTCTTCTAGTGTGCAAGCTAATGCCTAATGGAGCACTATCAAAGTTCCTCTTCGGAAGTGGCGAAACCCCTAGTTGGACACAGAGGGTAGAAATTGCAATAGGAATAGACAGAGGATTAGCGTACTTACACGAAGGGTGCGAGACGCATATCATCCATTGCGACTTGAAGCCCCAAAATGTACTGCTCGATGCAAATTACACAGCGAAAACAGCAGATTTTGGGATATCGAATCCGTTGAAGAAGGATCAAACGAGAAGGAAGATGGTGGTGAGAGGGACATACGGGTACATGGCGCCGGAGTGGCTGAGGGGAGCTCCGGTGACGACGAAGGTTGACTTGTACCGCTATGGGATAATAAGGTCAATTGAGTTGGATCGAATCGAAGAAGAAAGTAAGGAGGAGGATTTAGTTTTGTCGAATTGGATTCTGTGTCGGTCAGTTATGTTGGTCAATTACCATGTCGTTATCGTTACTTTGCTTATATTTGATCTCATATTAAACAACAATATTCAAACAATACGAGTATCAATATCATCAATCAATATTAGTATCGACTTCGACAGTAATCTTTATTGA 2127 42.88 MAAIKVLHLSLPVLLCFLHCYAQTDRIGIGFINPLLGRIKIGHHPPANLLLGSTRSSMENTLSAQCSTKFLKELWFGLPTETTRHRLVQTLFSESPAKLCSFMEMVSKFQSIMEKTRAMLQCPTMATLCCSVPPPPFPYGRASILPPILYCLDSIQTIISTQTPIDSGQIQDDGNFVLKTPIPHPSNKALIRRQTHSFLDRFWGSTKRCSPQENISDFSIGNFMLQMQKDGNLVLLITTFSDIRYRFTIATNIQNIVLVFDNSSALINLTVNFIALEDYYHRATIGVHGDFRQYAYPKTNGNGCKRIWRAMNDPCLVNTVCGLNGLCKSSDNDTVTCENSRKNFEVQVIDDVVIDFPPGRGQFSKLASTEGMDVERCKEANTRRWLRHGCNFERRCVRKRTPLMNARNTSNTKGLKTLIKVPLPSANTGNFQVQVPSESISGNSLSRNCLMQLMDSTKSSAKELLVRRCGNCSETPRQMTEIVEKEFLTEATIISWTYHKNLVRLLGYCVENEKNRLLLVCKLMPNGALSKFLFGSGETPSWTQRVEIAIGIDRGLAYLHEGCETHIIHCDLKPQNVLLDANYTAKTADFGISNPLKKDQTRRKMVVRGTYGYMAPEWLRGAPVTTKVDLYRYGIIRSIELDRIEEESKEEDLVLSNWILCRSVMLVNYHVVIVTLLIFDLILNNNIQTIRVSISSINISIDFDSNLY 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5030842 5034088 + ClCG05G005210.1 Cla05g00552 272042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00552 708 PANTHER SERINE/THREONINE-PROTEIN KINASE 479 668 - -
Cla05g00552 708 Pfam Protein kinase domain 479 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00552 708 SMART serkin_6 352 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00552 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Cla05g00552 708 PANTHER SERINE/THREONINE-PROTEIN KINASE 338 432 - -
Cla05g00552 708 Gene3D Phosphorylase Kinase; domain 1 456 527 - -
Cla05g00552 708 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 338 432 - -
Cla05g00552 708 PANTHER SERINE/THREONINE-PROTEIN KINASE 154 338 - -
Cla05g00552 708 ProSiteProfiles Protein kinase domain profile. 420 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00552 708 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 479 668 - -
Cla05g00552 708 SUPERFAMILY Protein kinase-like (PK-like) 483 636 IPR011009 -
Cla05g00552 708 Gene3D Transferase(Phosphotransferase) domain 1 528 640 - -
Cla05g00552 708 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 154 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00552 - - - minc:123220197 377.481
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00552 Cla-Chr5:5030842 Cla02g02278 Cla-Chr2:37868454 1.84E-08 dispersed
Cla05g00552 Cla-Chr5:5030842 Cla05g00556 Cla-Chr5:5055029 6.58E-37 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g481 . . . . . . . . . . . Cma14g01697 . Car14g01528 . . . Bhi01g00821 . . . . . Lcy11g1537 . . . . . . . . . . . Lsi05g01426 . . . . . . . . . . . . . Cmo14g01742 . . . . . . . . . . . . . Cla05g00552 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001427 0 3 0 0 0 4 2 3 3 1 2 4 2 1 5 1 4 1 1 4 0 4 3 2 7 6 3 2 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80542 PF00069 Pkinase 3.20E-30 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00552 Cla_Chr05 FPKM 147.926788 146.571884 28.650978 27.903593 7.04328 8.112415 6.325995 45.510925 47.229168 43.623852