Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00554 ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCAGCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA 630 53.02 MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAAPVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5047525 5048154 - ClCG05G005225.1 Cla05g00554 272044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00554 209 SUPERFAMILY Photosystem I subunit PsaD 74 208 IPR036579 GO:0009522|GO:0009538|GO:0015979
Cla05g00554 209 MobiDBLite consensus disorder prediction 46 77 - -
Cla05g00554 209 Gene3D Photosystem I PsaD, reaction center subunit II 67 209 - -
Cla05g00554 209 Pfam PsaD 77 207 IPR003685 GO:0009522|GO:0009538|GO:0015979
Cla05g00554 209 MobiDBLite consensus disorder prediction 1 21 - -
Cla05g00554 209 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED 1 209 IPR003685 GO:0009522|GO:0009538|GO:0015979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00554 K02692 psaD; photosystem I subunit II - csv:101207214 375.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g477 . . . . . Bpe14g01181 . . . . Cma06g01417 Cma14g01696 Car06g01223 Car14g01527 Sed02g1247 Cpe08g00254 Cpe03g01427 Bhi01g00824 Tan10g0856 Cmetu06g1314 . Hepe05g1539 . Lcy11g1530 . . . . . . . . . . . Lsi05g01428 . . Cme06g00618 Blo02g00545 . . Bda13g00131 . Bpe13g00612 . . . . Cmo14g01741 . . . . . . . . . . . . . Cla05g00554 Cam05g0604 Cec05g0613 Cco05g0611 Clacu05g0600 Cmu05g0570 Cre05g0639 . Csa03g01342 Chy06g00588 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009195 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00554 Cla_Chr05 FPKM 6.413727 9.214629 14.477638 13.646716 2.629038 2.950838 2.477878 18.968702 17.634817 17.846592