Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00562 ATGGAGCTTCAGAAGCGCCTAGATCATAGTCTCCCAGAGAGGAAAGGCCATAAGCGGAAACTGGAGGAGGAATTTGAAGAGGAACGGGAGATCTCTGTACCTACAGGGGACGCCAAGCAAGCGTTACTCACCGAGGTCAGTGATCAAGTTGAAATTCTCAATTCCACTTTTTCATGGAAGGAAGCCGATCGAGCTGCTGCTAAGCGAGCTACTCATGTTCTTGCCGAGCTTGCTAAGAACGAAGAAGTAGTAAACGTGATTGTGGAAGGTGGAGCCGTGCCGGCTTTAGTCAAGCATCTACAAGCACCGCCTACTGTTGAAGGTGATCGCAGTCTTAAGCCATTCGAGCACGAGGTTGAGAAAGGAAGTGCTTTTGCTCTTGGACTACTGGCTGTAAAGCCAGAGCACCAGCAACTGATAGTTGACATTGGCGCTCTATCACACCTGGTTGAGCTATTGAAGAGGCACAAGGATGGTTCTTCTCGAGCTGTAAACAGTGTTATTCGTAGAGCTGCAGATGCCATTACTAATCTTGCCCATGAGAACAGTTTCATCAAAACACGGGTTAGGATGGAAGGTGGAATTCCTCCGCTTGTTGAATTGCTTGAATTTACTGACACAAAGGTGCAAAGAGCTGCTGCTGGGGCATTACGAACATTGGCCTTTAAGAACGATGAGAACAAAAACCAAGTAATTGGCATTTTACTTCAAATTGGAGGTTTAACTGTAGGTTTAATATGTAAATCATTCATTGTCTTGGCTAACTGGCAGATTGTTGAGTGCAATGCTCTCCCTACACTCATTTTGATGCTTCGTTCTGAGGATGCTGCTATACATTATGAAGCGGTTGGTGTTATCGGTAATTTGGTGCACTCATCCCCAAATATAAAGAGAGAAGTTCTTCTTGCAGGAGCTTTGCAACCTGTTATTGGATTACTCAGTTCTTGCTGCTCTGAGAGCCAAAGGGAGGCAGCGTTATTACTTGGACAATTTGCAGCAACTGATTCGGATTGTAAGATTCACATTGTACAGAGAGGTGCTGTCCGACCCTTAATTGAGATGCTTCAATCACCTGATGTACAGCTTCGAGAAATGTCAGCTTTTGCATTGGGGAGGTTGGCACAGGAAACTCATAATCAAGCTGGTATTGCTCACAATGGTGGTCTAATGCCACTACTGAAGCTTCTGGATTCAAAAAATGGTTCTTTGCAACATAATGCGGCATTTGCTCTTTATGGTCTTGCAGACAATGAGGATAATGTATCTGATTTTATTAGGGTGGGAGGAGTTCAGAAGCTTCAAGATGGAGAATTTATAGTGCAAGCAACAAAAGATTGTGTAGCAAAGACACTCAAGAGATTAGAGGAGAAAATACATGGAAGGGTTTTAAATCACTTATTACATCTAATGCGTGTAGCTGAGAAAGCTGTGCAAAGACGAGTCTCCCTTGCTCTTGCTCATCTTTGTTCACCTGATGATCAGAGGACCATATTTATCGATAATAATGGCATTCTCAAGCAGCAGCTTGATGGTGCTGTTGCGCTGTACAAGCTGGCAAATAAAGCCACGACTCTTTCTCCTGTGGATGCTGCTCCACCATCTCCAACACCACAGGTTTACCTCGGTGAGCAGTATGTGAACAATCCGACACTATCTGATGTGACTTTTCTTGTTGAAGGAAGACGCTTCCATGCCCACAGAATTTGCTTGCTTGCTTCTTCGGATGCATTCCGTGCCATGTTTGATGGTGGCTATCGGGAGAAGGATGCTAAGGATATAGAAATTCCAAATATTAGATGGGAAGTTTTTGAGCTAATGATGAGATTTGTTTACACCGGATCTGTGGATGTTTTGTTGGATATTGCTCAAGATCTCCTGAGAGCTGCCGATCAGTATCTCTTGGAGGGACTTAAACGATTGTGCGAATACACCATTGCACAGGATATATCATTGGAAAATGTTTCAAGCATGTATGAACTCTCAGAAGCCTTTAATGCCATATCTTTGAGACACACGTGCATCCTTTTTATCTTGGAACAATTTGAAAAACTCAGTGGAATGCCAGGGCATTCTCTTCTAATTCAGCGCATACTTCCCGAGATCCGCAATTATTTTGCTAAAGCCCTGACCAAGGCTAATCTCCAGAGCTCACGGCTGTAG 2160 43.89 MELQKRLDHSLPERKGHKRKLEEEFEEEREISVPTGDAKQALLTEVSDQVEILNSTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPPTVEGDRSLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDGSSRAVNSVIRRAADAITNLAHENSFIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQVIGILLQIGGLTVGLICKSFIVLANWQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCSPDDQRTIFIDNNGILKQQLDGAVALYKLANKATTLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFVYTGSVDVLLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEQFEKLSGMPGHSLLIQRILPEIRNYFAKALTKANLQSSRL 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5143405 5149457 + ClCG05G005280.1 Cla05g00562 272052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00562 719 CDD BTB_POZ_ARIA_plant 539 654 - -
Cla05g00562 719 Gene3D - 45 241 IPR011989 -
Cla05g00562 719 MobiDBLite consensus disorder prediction 1 30 - -
Cla05g00562 719 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 232 - -
Cla05g00562 719 Pfam Armadillo/beta-catenin-like repeat 189 221 IPR000225 GO:0005515
Cla05g00562 719 Pfam Armadillo/beta-catenin-like repeat 257 290 IPR000225 GO:0005515
Cla05g00562 719 Pfam Armadillo/beta-catenin-like repeat 335 374 IPR000225 GO:0005515
Cla05g00562 719 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 257 712 IPR044282 -
Cla05g00562 719 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 10 232 IPR044282 -
Cla05g00562 719 SMART BTB_4 552 649 IPR000210 GO:0005515
Cla05g00562 719 ProSiteProfiles BTB domain profile. 552 619 IPR000210 GO:0005515
Cla05g00562 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 183 IPR000225 GO:0005515
Cla05g00562 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Cla05g00562 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 145 IPR000225 GO:0005515
Cla05g00562 719 Gene3D - 254 524 IPR011989 -
Cla05g00562 719 SUPERFAMILY ARM repeat 48 435 IPR016024 -
Cla05g00562 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Cla05g00562 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Cla05g00562 719 SMART arm_5 182 222 IPR000225 GO:0005515
Cla05g00562 719 SMART arm_5 376 416 IPR000225 GO:0005515
Cla05g00562 719 SMART arm_5 80 132 IPR000225 GO:0005515
Cla05g00562 719 SMART arm_5 257 291 IPR000225 GO:0005515
Cla05g00562 719 SMART arm_5 133 180 IPR000225 GO:0005515
Cla05g00562 719 SMART arm_5 335 375 IPR000225 GO:0005515
Cla05g00562 719 SMART arm_5 293 333 IPR000225 GO:0005515
Cla05g00562 719 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 257 712 - -
Cla05g00562 719 SUPERFAMILY POZ domain 543 646 IPR011333 -
Cla05g00562 719 Gene3D Potassium Channel Kv1.1; Chain A 532 678 IPR011333 -
Cla05g00562 719 Pfam BTB/POZ domain 545 647 IPR000210 GO:0005515
Cla05g00562 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 262 304 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00562 - - - csv:101207702 1291.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00562 Cla-Chr5:5143405 Cla06g00536 Cla-Chr6:6437417 4.85E-15 dispersed
Cla10g01527 Cla-Chr10:30567769 Cla05g00562 Cla-Chr5:5143405 7.42E-08 dispersed
Cla05g00562 Cla-Chr5:5143405 Cla05g00586 Cla-Chr5:5379441 1.26E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61021 PF00651 BTB 2.80E-25 CL0033 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00562 Cla_Chr05 FPKM 6.943953 7.299221 15.769417 15.065204 10.519171 11.560444 10.137278 18.706264 16.918936 15.638485