Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00563 ATGGTGAAGGAGAAAAGGATTCATCTTGAAATGGCGGCTAGATTTAGAGCACGTTTGATAATGGACTCTGTAGCCAAGAATTCAGAACGTAGGCCAATTTCTATTAAGTTGTGGCCTCCTAGTGAAAATACTCGGAAAATGCTTGTGGAGCGGATGACAAATAACCTTACCAGCAAATCCTTTTTCACCCAAAAATATGGTACTCTTAGTCAGGAAGAGGCTACAGATGAGTCAAAGAGAATTGAAGATATTGCTTTTGAGACGGCTAATCAGAATTATGAAAAACAGCCAGATGGTGATGGGGGTGCTGCTGTACAACTTTATGCCAAGGAATGCAGCAGGCTTCTTCTTGAGGTTCTTAAGAGAGGTCCTAAAGTTGAGGCAGACAAGGAGGCTGGATCTGATATCACTAGTGCTCCTCCTGAAATCTGTTTCGACATCTCAAAAGGTCGACGAGCCTTTATCGAGGCAGAGGAAGCTGAAGAACTTCTAAAGCCTTTGAAAGAGCCAGGGAATTCTTATACCAAGATATGTTTCAGCAACCAAAGCTTTGGTTTAGAAGCAGCTCGTGTGACTGAGCCCATTCTTGTGTCCCTCAAGGATCAATTAAAAGAAGTGGATCTCTCTGATTTTATTGCAGGAAGACCAGAGTTAGAAGCTGTAGAGGTCATGAAATTGTTCTCTGATGCTTTAGAAGGCAGCATCTTGAGATCCTTGAACCTCTCAAACAATGCCTTAGGTGAGAAGGGTGTGAGAGCTTTTGGCTCTCTCCTGAAATCACAGTCTTGTTTAGAGGAGCTATATTTGATGAATGATGGAATTTCCAAGGAAGCTGCTCAGGCAGTATCTGAGTTGATTCCTTCAACAGGTAAGCTTAAGATCCTTCATTTTCATAATAACATGACAGGCGATGAAGGTGCTTTTGCTATTGCCGAAGTTGTAAAGCGTTCTCCTCTATTGGAAGATTTTCGTTGCTCCTCTACAAGAATAGACTCTGAGGGGGGTGTTGCCTTATCTTCAGCACTCAGGACTTGTACCAGATTGAAGAAACTCGACCTTCGAGACAACATGTTTGGAGTGGAAGGTGGAGTTGCTCTGAGTAAAGCCCTTTCACATCATGCGGATCTCAAGGAGCTGTATTTGAGTTACCTGAACTTGGAAGATGAAGGTGCAATTGCCATAGCCAATATACTGAAGGATACTGCTCCTGCGCTTGAAGTCTTGGAAATGGCTGGAAATGACATTACAGCTGAAGCTGCTTCTGCATTAGCTGCTTGCATAGCACAAAAGCCCCATCTGACCAGCTTGAGTTTGGCTGAGAATGAACTGAAAGATGAAGGAACCATCCAAATCAGTAAGGCATTAGAAAGTCCAAACAAAATAAAGGAAGTTGACATGAATACCAACTTAATTAGGAGAGCTGGTGCTCGGGTTTTAGCTCAAACTGTGGTTCAAAAGCCTGGTTTCCAACTGCTAAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGTTGAAGGATATTTTCAAGAAATCTCCGAATATGCTCGGGCCCTTGGATGAAAACGATCCCGAAGGGGAAGATGGCAACGACGAGGAATCTGTAGCGGAGGATGATGAGGAGGAGGATGAATTGGGATCAAAACTAAAGAACCTTGAAGTTGATCAAGAGAACTAG 1683 42.9 MVKEKRIHLEMAARFRARLIMDSVAKNSERRPISIKLWPPSENTRKMLVERMTNNLTSKSFFTQKYGTLSQEEATDESKRIEDIAFETANQNYEKQPDGDGGAAVQLYAKECSRLLLEVLKRGPKVEADKEAGSDITSAPPEICFDISKGRRAFIEAEEAEELLKPLKEPGNSYTKICFSNQSFGLEAARVTEPILVSLKDQLKEVDLSDFIAGRPELEAVEVMKLFSDALEGSILRSLNLSNNALGEKGVRAFGSLLKSQSCLEELYLMNDGISKEAAQAVSELIPSTGKLKILHFHNNMTGDEGAFAIAEVVKRSPLLEDFRCSSTRIDSEGGVALSSALRTCTRLKKLDLRDNMFGVEGGVALSKALSHHADLKELYLSYLNLEDEGAIAIANILKDTAPALEVLEMAGNDITAEAASALAACIAQKPHLTSLSLAENELKDEGTIQISKALESPNKIKEVDMNTNLIRRAGARVLAQTVVQKPGFQLLNINGNFISDEGIDELKDIFKKSPNMLGPLDENDPEGEDGNDEESVAEDDEEEDELGSKLKNLEVDQEN 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5152815 5154870 + ClCG05G005290.2 Cla05g00563 272053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00563 560 Pfam WPP domain 34 129 IPR025265 -
Cla05g00563 560 Gene3D Ribonuclease Inhibitor 429 545 IPR032675 -
Cla05g00563 560 Pfam Leucine Rich repeat 344 367 IPR001611 GO:0005515
Cla05g00563 560 Pfam Leucine Rich repeat 236 254 IPR001611 GO:0005515
Cla05g00563 560 Pfam Leucine Rich repeat 375 395 IPR001611 GO:0005515
Cla05g00563 560 Pfam Leucine Rich repeat 430 447 IPR001611 GO:0005515
Cla05g00563 560 Pfam Leucine Rich repeat 405 424 IPR001611 GO:0005515
Cla05g00563 560 SUPERFAMILY RNI-like 154 535 - -
Cla05g00563 560 MobiDBLite consensus disorder prediction 523 546 - -
Cla05g00563 560 Gene3D Ribonuclease Inhibitor 148 428 IPR032675 -
Cla05g00563 560 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 21 560 - -
Cla05g00563 560 Gene3D WPP domain 34 132 IPR038214 -
Cla05g00563 560 SMART LRR_RI_2 289 316 - -
Cla05g00563 560 SMART LRR_RI_2 373 400 - -
Cla05g00563 560 SMART LRR_RI_2 486 513 - -
Cla05g00563 560 SMART LRR_RI_2 261 288 - -
Cla05g00563 560 SMART LRR_RI_2 458 485 - -
Cla05g00563 560 SMART LRR_RI_2 233 260 - -
Cla05g00563 560 SMART LRR_RI_2 402 429 - -
Cla05g00563 560 SMART LRR_RI_2 430 457 - -
Cla05g00563 560 SMART LRR_RI_2 345 372 - -
Cla05g00563 560 MobiDBLite consensus disorder prediction 514 560 - -
Cla05g00563 560 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 21 560 IPR045203 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00563 K14319 RANGAP1; Ran GTPase-activating protein 1 - csv:101208192 915.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00563 Cla-Chr5:5152815 Cla09g00701 Cla-Chr9:6821269 0 dispersed
Cla05g00563 Cla-Chr5:5152815 Cla05g02083 Cla-Chr5:32491195 1.01E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00563 Cla_Chr05 FPKM 13.252157 12.156569 3.505012 3.515948 3.358539 3.088672 4.887325 0.0 0.0 0.0