Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00569 ATGGAAGTTGCTTTGGAACTTGAAGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTTTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCCACATGTTTCTCTTCAGGCTCTGTCTCATGGAGTGCACTACCCCACACGGCCACTGGCTACGCATGAACATGCCACCGCCGTGGTGGCCGCTGCCTACAGCGGCGTAAGCAAGGGCACCGGCGTGTTCATCCCTAGGTCCCTGCAGCCTGCAAGAAAACAGAGGCGTGGAAGACACAATAATATAAAGCCAAACCGACAGTTTCATATCAGTATTGATGTGAACTCACAAGTATCTTCCAACAACCATTCGATCCGTCCTAAAAAGGGTTAA 375 49.07 MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGVHYPTRPLATHEHATAVVAAAYSGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHSIRPKKG 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5218091 5218673 - ClCG05G005340.2 Cla05g00569 272059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00569 124 PANTHER OS05G0397300 PROTEIN 1 118 - -
Cla05g00569 124 MobiDBLite consensus disorder prediction 98 118 - -
Cla05g00569 124 PANTHER OS05G0397300 PROTEIN 1 118 - -
Cla05g00569 124 MobiDBLite consensus disorder prediction 81 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00569 - - - csv:101209089 219.164
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00569 Cla-Chr5:5218091 Cla06g00551 Cla-Chr6:6726649 2.34E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g446 . . . . . . . . . . Cma06g01428 . Car06g01231 . . Cpe08g00246 . . . . . . . . . . . . . . . . . . . Lsi05g01446 . . . . . Bda11g00564 . . Bpe13g00619 . Bma06g01543 . Cmo06g01431 . . . . . . . . . . . . . . Cla05g00569 Cam05g0625 Cec05g0636 Cco05g0631 Clacu05g0621 Cmu05g0589 Cre05g0658 . Csa03g01359 Chy06g00603 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002791 2 2 0 1 1 1 3 1 2 2 2 1 4 1 2 2 1 2 2 1 2 1 2 0 2 2 2 3 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00569 Cla_Chr05 FPKM 0.621145 0.22037 0.664332 0.768636 0.625937 0.45586 0.892454 1.254637 0.799777 1.112619