Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00575 ATGGCTTCAAATAATAACAATAATACAATCCCGGCCTTCCCACAACCGTCAACAATGGACCATAATCTAGCTCGCCCGGTTTTGGGAGAGATGGTGGGGAGTTTCTTGTTGATGATTTGTGTGAGCGGGGTGACGGCGACCGGGCAGCTGATGGGCGGTCATATGGGTCTAGTGGACTACGCGGCTGCCGCCGGTTTGACAGTCGGCGTTTTGACGTTCTGCTTTGCTCCCATTTCGGGTGCTCATTTTAATCCTGCCATCACTCTTGCCTCTGCCATTTTTGGTCACTTTCCATGGTCTAGGGTAATGGCATATGGAGTGGCTCAAACAACAGGTTGTGTAATGGCAACATATGCAGCAATATTTGTTTACGACATAAAACCTCAACAATTGACCACTCGACCATTTCATTCCTCCATTTCTGCCTTCTCCCTCGAGCTTCTTGCAACTTTCATTCTCATGTTCCTTCTTTCTTCTTTAACCTATCACCCCCAATCAATTGGTCATTTATCGGCCTTCGTCATTGGAATGGCCATTGGGCTTGCTGTATTCATCGCCGGGCCCATTTCAGGTGCATCAATGAACCCAGCAAGATCTTTAGGGCCGGCAATCGTTTCATGGGCTTTCGATGACATATGGATCTATATTACAGCTCCTGTCATCGGAGCCGTTACCGGTGCCTTCTTGAGCAGCGTCCTCCGCCTTCGACCTCCACCGCTCCATTCTTCCTCCTCCCCTTCCAACAGCAGACTTTTTCATCGCTCCTCCTCAGCCAACGCACATCTAATTACTTAG 795 49.06 MASNNNNNTIPAFPQPSTMDHNLARPVLGEMVGSFLLMICVSGVTATGQLMGGHMGLVDYAAAAGLTVGVLTFCFAPISGAHFNPAITLASAIFGHFPWSRVMAYGVAQTTGCVMATYAAIFVYDIKPQQLTTRPFHSSISAFSLELLATFILMFLLSSLTYHPQSIGHLSAFVIGMAIGLAVFIAGPISGASMNPARSLGPAIVSWAFDDIWIYITAPVIGAVTGAFLSSVLRLRPPPLHSSSSPSNSRLFHRSSSANAHLIT 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5252238 5254014 - ClCG05G005390.1 Cla05g00575 272065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00575 264 PANTHER AQUAPORIN NIP2-1 15 252 IPR034294 -
Cla05g00575 264 ProSitePatterns MIP family signature. 82 90 IPR022357 -
Cla05g00575 264 Gene3D Glycerol uptake facilitator protein. 2 237 IPR023271 -
Cla05g00575 264 SUPERFAMILY Aquaporin-like 20 239 IPR023271 -
Cla05g00575 264 Pfam Major intrinsic protein 22 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g00575 264 MobiDBLite consensus disorder prediction 241 264 - -
Cla05g00575 264 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g00575 264 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g00575 264 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g00575 264 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g00575 264 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g00575 264 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g00575 264 PANTHER AQUAPORIN NIP7-1-RELATED 15 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00575 K09874 NIP; aquaporin NIP - csv:101203206 383.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00575 Cla-Chr5:5252238 Cla05g01171 Cla-Chr5:12728940 1.30E-15 dispersed
Cla05g00575 Cla-Chr5:5252238 Cla10g01892 Cla-Chr10:34818950 2.68E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g437 . . . . . . . Bma05g00938 . . . Cma14g01679 . Car14g01513 . . Cpe03g01417 Bhi01g00854 . . . . . Lcy11g1511 . . . . . . . . . . Cone4ag0210 Lsi05g01452 . . Cme06g00639 . . . . Bpe05g00748 . . . . . Cmo14g01724 . . . . . . . . . . . . . Cla05g00575 Cam05g0630 Cec05g0641 Cco05g0635 Clacu05g0626 Cmu05g0594 Cre05g0662 . Csa03g01364 Chy06g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010672 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00575 Cla_Chr05 FPKM 2.049772 1.402042 12.930614 13.551979 20.698647 19.243736 21.387781 3.759459 3.873635 2.897381